miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3136 3' -53.1 NC_001493.1 + 70549 0.66 0.96046
Target:  5'- --aACUcgaGCGAUAgCCUCGCGcguGACGa -3'
miRNA:   3'- caaUGG---UGCUGUgGGAGCGCuu-CUGC- -5'
3136 3' -53.1 NC_001493.1 + 123143 0.66 0.960096
Target:  5'- --cACCGCGGCucuCCCUgugcggucauguaCGCGggGAg- -3'
miRNA:   3'- caaUGGUGCUGu--GGGA-------------GCGCuuCUgc -5'
3136 3' -53.1 NC_001493.1 + 7589 0.66 0.960096
Target:  5'- --cACCGCGGCucuCCCUgugcggucauguaCGCGggGAg- -3'
miRNA:   3'- caaUGGUGCUGu--GGGA-------------GCGCuuCUgc -5'
3136 3' -53.1 NC_001493.1 + 36215 0.67 0.956719
Target:  5'- -gUACCGgGGCGgCCUgCGCGggGGu- -3'
miRNA:   3'- caAUGGUgCUGUgGGA-GCGCuuCUgc -5'
3136 3' -53.1 NC_001493.1 + 91899 0.67 0.952744
Target:  5'- aUUACUGCGACACUUUgGUGGgcugacAGACGu -3'
miRNA:   3'- cAAUGGUGCUGUGGGAgCGCU------UCUGC- -5'
3136 3' -53.1 NC_001493.1 + 94517 0.67 0.948531
Target:  5'- --cACCAgGAUACCCggggcCGUGAGGuCGu -3'
miRNA:   3'- caaUGGUgCUGUGGGa----GCGCUUCuGC- -5'
3136 3' -53.1 NC_001493.1 + 69588 0.67 0.948531
Target:  5'- -cUGCCGCGGCcucgGCUCguUCGCGAucggGGACa -3'
miRNA:   3'- caAUGGUGCUG----UGGG--AGCGCU----UCUGc -5'
3136 3' -53.1 NC_001493.1 + 37250 0.67 0.941286
Target:  5'- --gACCACGACGCugcacuccaguaucaCCUCGUuGAGGCc -3'
miRNA:   3'- caaUGGUGCUGUG---------------GGAGCGcUUCUGc -5'
3136 3' -53.1 NC_001493.1 + 67817 0.67 0.939376
Target:  5'- --gACCACGGCAUCgCUCGacgcCGAGGAg- -3'
miRNA:   3'- caaUGGUGCUGUGG-GAGC----GCUUCUgc -5'
3136 3' -53.1 NC_001493.1 + 60370 0.67 0.934936
Target:  5'- --aGCCAcCGGCGCCCgcgagguugauaguUCGCGGcgggcuucgauuucgAGACGg -3'
miRNA:   3'- caaUGGU-GCUGUGGG--------------AGCGCU---------------UCUGC- -5'
3136 3' -53.1 NC_001493.1 + 133135 0.67 0.93443
Target:  5'- -gUGCC-CG-CACCCUgGCGcgcguGGACGa -3'
miRNA:   3'- caAUGGuGCuGUGGGAgCGCu----UCUGC- -5'
3136 3' -53.1 NC_001493.1 + 17580 0.67 0.93443
Target:  5'- -gUGCC-CG-CACCCUgGCGcgcguGGACGa -3'
miRNA:   3'- caAUGGuGCuGUGGGAgCGCu----UCUGC- -5'
3136 3' -53.1 NC_001493.1 + 97493 0.67 0.93443
Target:  5'- --aGCCAaguCGuggguCACCCgCGUGGAGACGa -3'
miRNA:   3'- caaUGGU---GCu----GUGGGaGCGCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 57676 0.67 0.933922
Target:  5'- -aUGCCAUGAUggaggagAUgCUCgGCGAGGGCGg -3'
miRNA:   3'- caAUGGUGCUG-------UGgGAG-CGCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 62993 0.68 0.929235
Target:  5'- --gACCGgcacCGugACCgUCGCGAcGGCGa -3'
miRNA:   3'- caaUGGU----GCugUGGgAGCGCUuCUGC- -5'
3136 3' -53.1 NC_001493.1 + 52885 0.68 0.924348
Target:  5'- --cGCCGCGucaucucgcucaagcCACCCUCGgagucagucuCGAGGACGa -3'
miRNA:   3'- caaUGGUGCu--------------GUGGGAGC----------GCUUCUGC- -5'
3136 3' -53.1 NC_001493.1 + 131804 0.68 0.923792
Target:  5'- -cUACCGCGAUGCCUguUCGCGcuGAa- -3'
miRNA:   3'- caAUGGUGCUGUGGG--AGCGCuuCUgc -5'
3136 3' -53.1 NC_001493.1 + 16250 0.68 0.923792
Target:  5'- -cUACCGCGAUGCCUguUCGCGcuGAa- -3'
miRNA:   3'- caAUGGUGCUGUGGG--AGCGCuuCUgc -5'
3136 3' -53.1 NC_001493.1 + 24658 0.68 0.91216
Target:  5'- --cGCCuggggauCGAgGCCCUCGUGAGGuuuacGCGg -3'
miRNA:   3'- caaUGGu------GCUgUGGGAGCGCUUC-----UGC- -5'
3136 3' -53.1 NC_001493.1 + 43272 0.68 0.905974
Target:  5'- aUUAUCAUGGCGCCC-CGUGGucguguacugcaGGGCGu -3'
miRNA:   3'- cAAUGGUGCUGUGGGaGCGCU------------UCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.