miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3136 5' -62.2 NC_001493.1 + 5315 0.69 0.465528
Target:  5'- cGGCugcacgcucgGCCCCGGUgacCGGGGGgCUgGcGGGu -3'
miRNA:   3'- -CCG----------CGGGGCCAa--GCCCUCaGAgC-CCC- -5'
3136 5' -62.2 NC_001493.1 + 14902 0.69 0.456747
Target:  5'- aGGgGCCCCGGa--GGGAG-CggugCGGGu -3'
miRNA:   3'- -CCgCGGGGCCaagCCCUCaGa---GCCCc -5'
3136 5' -62.2 NC_001493.1 + 130456 0.69 0.456747
Target:  5'- aGGgGCCCCGGa--GGGAG-CggugCGGGu -3'
miRNA:   3'- -CCgCGGGGCCaagCCCUCaGa---GCCCc -5'
3136 5' -62.2 NC_001493.1 + 120752 0.7 0.448055
Target:  5'- aGGCGCCCUucucGUgaGGcGcGUCUCGGGGa -3'
miRNA:   3'- -CCGCGGGGc---CAagCC-CuCAGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 64264 0.7 0.439456
Target:  5'- cGGUcuccgGCCCgGGggUGGGAGUCUCGuuGGu -3'
miRNA:   3'- -CCG-----CGGGgCCaaGCCCUCAGAGCc-CC- -5'
3136 5' -62.2 NC_001493.1 + 27798 0.7 0.430952
Target:  5'- cGGUGUCCCGGc-CGGuGGUaUCGGGGc -3'
miRNA:   3'- -CCGCGGGGCCaaGCCcUCAgAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 128391 0.7 0.422545
Target:  5'- cGCGUCCgGGgUCGGGGcgCUCGGGa -3'
miRNA:   3'- cCGCGGGgCCaAGCCCUcaGAGCCCc -5'
3136 5' -62.2 NC_001493.1 + 12837 0.7 0.422545
Target:  5'- cGCGUCCgGGgUCGGGGcgCUCGGGa -3'
miRNA:   3'- cCGCGGGgCCaAGCCCUcaGAGCCCc -5'
3136 5' -62.2 NC_001493.1 + 7835 0.7 0.414237
Target:  5'- gGGUuCCCCGGg--GGGAGgguuaaUCGGGGa -3'
miRNA:   3'- -CCGcGGGGCCaagCCCUCag----AGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 123389 0.7 0.414237
Target:  5'- gGGUuCCCCGGg--GGGAGgguuaaUCGGGGa -3'
miRNA:   3'- -CCGcGGGGCCaagCCCUCag----AGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 87791 0.7 0.406031
Target:  5'- -aCGCCCCGGg--GGGcaGGUCcCGGGGu -3'
miRNA:   3'- ccGCGGGGCCaagCCC--UCAGaGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 25613 0.71 0.389928
Target:  5'- aGGCGCCCgucuuuuuCGGgaCaGGAGgUUCGGGGg -3'
miRNA:   3'- -CCGCGGG--------GCCaaGcCCUCaGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 18146 0.72 0.354515
Target:  5'- cGCgGCCCCGaaacugaucgagUGGGAgGUCUCGGGGa -3'
miRNA:   3'- cCG-CGGGGCcaa---------GCCCU-CAGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 133700 0.72 0.354515
Target:  5'- cGCgGCCCCGaaacugaucgagUGGGAgGUCUCGGGGa -3'
miRNA:   3'- cCG-CGGGGCcaa---------GCCCU-CAGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 46097 0.72 0.344197
Target:  5'- aGGCGCCUCG---UGGaGAGUCaggUCGGGGg -3'
miRNA:   3'- -CCGCGGGGCcaaGCC-CUCAG---AGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 12920 0.72 0.318667
Target:  5'- -cCGUCCCGGgaagguucgggagUGGGGGUCUCGGuGGa -3'
miRNA:   3'- ccGCGGGGCCaa-----------GCCCUCAGAGCC-CC- -5'
3136 5' -62.2 NC_001493.1 + 13305 0.72 0.318667
Target:  5'- cGGCGCUCCGGUcucgcUCcggucuuauagaccgGGGcuccAGUCUCGGGa -3'
miRNA:   3'- -CCGCGGGGCCA-----AG---------------CCC----UCAGAGCCCc -5'
3136 5' -62.2 NC_001493.1 + 128474 0.72 0.318667
Target:  5'- -cCGUCCCGGgaagguucgggagUGGGGGUCUCGGuGGa -3'
miRNA:   3'- ccGCGGGGCCaa-----------GCCCUCAGAGCC-CC- -5'
3136 5' -62.2 NC_001493.1 + 128859 0.72 0.318667
Target:  5'- cGGCGCUCCGGUcucgcUCcggucuuauagaccgGGGcuccAGUCUCGGGa -3'
miRNA:   3'- -CCGCGGGGCCA-----AG---------------CCC----UCAGAGCCCc -5'
3136 5' -62.2 NC_001493.1 + 13733 0.72 0.31592
Target:  5'- --aGCCUCGGgaCGGGucGGUCUCGGGc -3'
miRNA:   3'- ccgCGGGGCCaaGCCC--UCAGAGCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.