miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31360 3' -52.3 NC_006623.1 + 111977 0.66 0.971233
Target:  5'- uAUGAGcagccAAGGaUGCAGGGuGUGUGCa-- -3'
miRNA:   3'- -UACUC-----UUCC-ACGUCCCuCGUAUGaug -5'
31360 3' -52.3 NC_006623.1 + 339 0.66 0.961229
Target:  5'- -gGGGAgcgauugccgcGGG-GCAGGGGGU--GCUGCg -3'
miRNA:   3'- uaCUCU-----------UCCaCGUCCCUCGuaUGAUG- -5'
31360 3' -52.3 NC_006623.1 + 112221 0.68 0.929191
Target:  5'- uUG-GAAGG-GCGGGGAGCAcucaggggACUGg -3'
miRNA:   3'- uACuCUUCCaCGUCCCUCGUa-------UGAUg -5'
31360 3' -52.3 NC_006623.1 + 1330 0.68 0.923569
Target:  5'- -gGGGGAGGUGgGGGGgaaGGCAgggACcGCg -3'
miRNA:   3'- uaCUCUUCCACgUCCC---UCGUa--UGaUG- -5'
31360 3' -52.3 NC_006623.1 + 39590 0.68 0.905118
Target:  5'- uUGGGAuagcGGUGguGGuGAGCAUuauuuuaggACUGCu -3'
miRNA:   3'- uACUCUu---CCACguCC-CUCGUA---------UGAUG- -5'
31360 3' -52.3 NC_006623.1 + 135035 0.69 0.891517
Target:  5'- uUGAGuAGGcuu-GGGAGCAUAUUGCa -3'
miRNA:   3'- uACUCuUCCacguCCCUCGUAUGAUG- -5'
31360 3' -52.3 NC_006623.1 + 131377 0.71 0.780845
Target:  5'- -cGAGc-GGUuuCGGGGGGCGUGCUACg -3'
miRNA:   3'- uaCUCuuCCAc-GUCCCUCGUAUGAUG- -5'
31360 3' -52.3 NC_006623.1 + 23519 0.72 0.761082
Target:  5'- uUGAGccuuGUGUAGGGGGCAgggaUGCUGCg -3'
miRNA:   3'- uACUCuuc-CACGUCCCUCGU----AUGAUG- -5'
31360 3' -52.3 NC_006623.1 + 81309 0.73 0.688487
Target:  5'- cUGGGuauGGUGCAGGG-GCAguacgUGCUACc -3'
miRNA:   3'- uACUCuu-CCACGUCCCuCGU-----AUGAUG- -5'
31360 3' -52.3 NC_006623.1 + 8615 0.74 0.624088
Target:  5'- gGUGAGAuuGGacaUGCuguGGGAGUGUACUACa -3'
miRNA:   3'- -UACUCUu-CC---ACGu--CCCUCGUAUGAUG- -5'
31360 3' -52.3 NC_006623.1 + 16952 0.84 0.197298
Target:  5'- -aGuAGAAGGUGCA-GGAGCAUACUACu -3'
miRNA:   3'- uaC-UCUUCCACGUcCCUCGUAUGAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.