Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31360 | 3' | -52.3 | NC_006623.1 | + | 111977 | 0.66 | 0.971233 |
Target: 5'- uAUGAGcagccAAGGaUGCAGGGuGUGUGCa-- -3' miRNA: 3'- -UACUC-----UUCC-ACGUCCCuCGUAUGaug -5' |
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31360 | 3' | -52.3 | NC_006623.1 | + | 339 | 0.66 | 0.961229 |
Target: 5'- -gGGGAgcgauugccgcGGG-GCAGGGGGU--GCUGCg -3' miRNA: 3'- uaCUCU-----------UCCaCGUCCCUCGuaUGAUG- -5' |
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31360 | 3' | -52.3 | NC_006623.1 | + | 112221 | 0.68 | 0.929191 |
Target: 5'- uUG-GAAGG-GCGGGGAGCAcucaggggACUGg -3' miRNA: 3'- uACuCUUCCaCGUCCCUCGUa-------UGAUg -5' |
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31360 | 3' | -52.3 | NC_006623.1 | + | 1330 | 0.68 | 0.923569 |
Target: 5'- -gGGGGAGGUGgGGGGgaaGGCAgggACcGCg -3' miRNA: 3'- uaCUCUUCCACgUCCC---UCGUa--UGaUG- -5' |
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31360 | 3' | -52.3 | NC_006623.1 | + | 39590 | 0.68 | 0.905118 |
Target: 5'- uUGGGAuagcGGUGguGGuGAGCAUuauuuuaggACUGCu -3' miRNA: 3'- uACUCUu---CCACguCC-CUCGUA---------UGAUG- -5' |
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31360 | 3' | -52.3 | NC_006623.1 | + | 135035 | 0.69 | 0.891517 |
Target: 5'- uUGAGuAGGcuu-GGGAGCAUAUUGCa -3' miRNA: 3'- uACUCuUCCacguCCCUCGUAUGAUG- -5' |
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31360 | 3' | -52.3 | NC_006623.1 | + | 131377 | 0.71 | 0.780845 |
Target: 5'- -cGAGc-GGUuuCGGGGGGCGUGCUACg -3' miRNA: 3'- uaCUCuuCCAc-GUCCCUCGUAUGAUG- -5' |
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31360 | 3' | -52.3 | NC_006623.1 | + | 23519 | 0.72 | 0.761082 |
Target: 5'- uUGAGccuuGUGUAGGGGGCAgggaUGCUGCg -3' miRNA: 3'- uACUCuuc-CACGUCCCUCGU----AUGAUG- -5' |
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31360 | 3' | -52.3 | NC_006623.1 | + | 81309 | 0.73 | 0.688487 |
Target: 5'- cUGGGuauGGUGCAGGG-GCAguacgUGCUACc -3' miRNA: 3'- uACUCuu-CCACGUCCCuCGU-----AUGAUG- -5' |
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31360 | 3' | -52.3 | NC_006623.1 | + | 8615 | 0.74 | 0.624088 |
Target: 5'- gGUGAGAuuGGacaUGCuguGGGAGUGUACUACa -3' miRNA: 3'- -UACUCUu-CC---ACGu--CCCUCGUAUGAUG- -5' |
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31360 | 3' | -52.3 | NC_006623.1 | + | 16952 | 0.84 | 0.197298 |
Target: 5'- -aGuAGAAGGUGCA-GGAGCAUACUACu -3' miRNA: 3'- uaC-UCUUCCACGUcCCUCGUAUGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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