miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31360 5' -47.6 NC_006623.1 + 111876 0.66 0.999827
Target:  5'- gCGgaagcGCAUGCAgugccGCGCGCGAgggGUUUCg -3'
miRNA:   3'- gGCau---CGUAUGU-----UGUGCGCU---UAGAGa -5'
31360 5' -47.6 NC_006623.1 + 126535 0.66 0.999777
Target:  5'- aCCGUGGCAccc-GCGCaCGGAUUUCg -3'
miRNA:   3'- -GGCAUCGUauguUGUGcGCUUAGAGa -5'
31360 5' -47.6 NC_006623.1 + 146464 0.66 0.999716
Target:  5'- uCCaUGGCAcgaGCAACGuCGCGuAAUCUCc -3'
miRNA:   3'- -GGcAUCGUa--UGUUGU-GCGC-UUAGAGa -5'
31360 5' -47.6 NC_006623.1 + 115148 0.66 0.999716
Target:  5'- uCCaUGGCAcgaGCAACGuCGCGuAAUCUCc -3'
miRNA:   3'- -GGcAUCGUa--UGUUGU-GCGC-UUAGAGa -5'
31360 5' -47.6 NC_006623.1 + 45449 0.67 0.999434
Target:  5'- ---gGGCAUA-GGCugGCGAGUCUUUc -3'
miRNA:   3'- ggcaUCGUAUgUUGugCGCUUAGAGA- -5'
31360 5' -47.6 NC_006623.1 + 127784 0.67 0.999133
Target:  5'- uCCGUGGCAacUAGCGCGUGcAAUgUUg -3'
miRNA:   3'- -GGCAUCGUauGUUGUGCGC-UUAgAGa -5'
31360 5' -47.6 NC_006623.1 + 64150 0.69 0.996787
Target:  5'- aCCGUugacGCgGUACAACACGCGGuaaagCUUUu -3'
miRNA:   3'- -GGCAu---CG-UAUGUUGUGCGCUua---GAGA- -5'
31360 5' -47.6 NC_006623.1 + 132322 0.7 0.992962
Target:  5'- gCGagAGCAgGCGAgGCGUGGAUUUCUg -3'
miRNA:   3'- gGCa-UCGUaUGUUgUGCGCUUAGAGA- -5'
31360 5' -47.6 NC_006623.1 + 43162 0.71 0.982322
Target:  5'- aCGUGGUuuuCAGCuucgAUGCGAGUCUCg -3'
miRNA:   3'- gGCAUCGuauGUUG----UGCGCUUAGAGa -5'
31360 5' -47.6 NC_006623.1 + 3934 0.72 0.977746
Target:  5'- aUCGUcaGGCAUGCuuguGCACGCGAGUa--- -3'
miRNA:   3'- -GGCA--UCGUAUGu---UGUGCGCUUAgaga -5'
31360 5' -47.6 NC_006623.1 + 126693 0.73 0.954867
Target:  5'- aCCG-AGCAgaauCGACGCGCGAaagGUCUUUu -3'
miRNA:   3'- -GGCaUCGUau--GUUGUGCGCU---UAGAGA- -5'
31360 5' -47.6 NC_006623.1 + 35340 0.76 0.863885
Target:  5'- aCUGcgcGCAUGCGACACGCGuggCUCUa -3'
miRNA:   3'- -GGCau-CGUAUGUUGUGCGCuuaGAGA- -5'
31360 5' -47.6 NC_006623.1 + 136104 0.76 0.855798
Target:  5'- aCCGUAGguU-CGGCACGCGAuUUUCg -3'
miRNA:   3'- -GGCAUCguAuGUUGUGCGCUuAGAGa -5'
31360 5' -47.6 NC_006623.1 + 16987 1.1 0.016976
Target:  5'- uCCGUAGCAUACAACACGCGAAUCUCUu -3'
miRNA:   3'- -GGCAUCGUAUGUUGUGCGCUUAGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.