miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31361 3' -52.1 NC_006623.1 + 122694 0.66 0.986193
Target:  5'- uCGGcGGAcGCGAGGucggccggcAGGUGUCGgGACa -3'
miRNA:   3'- -GCCuCCUcCGCUUC---------UUCAUAGUgCUG- -5'
31361 3' -52.1 NC_006623.1 + 138918 0.66 0.986193
Target:  5'- uCGGcGGAcGCGAGGucggccggcAGGUGUCGgGACa -3'
miRNA:   3'- -GCCuCCUcCGCUUC---------UUCAUAGUgCUG- -5'
31361 3' -52.1 NC_006623.1 + 135757 0.66 0.980384
Target:  5'- -aGAGGAGuGCGAAGAAGUGaaACu-- -3'
miRNA:   3'- gcCUCCUC-CGCUUCUUCAUagUGcug -5'
31361 3' -52.1 NC_006623.1 + 123097 0.66 0.980384
Target:  5'- gGGGGGGGGgGggGuuGUGuuUCGCuGCc -3'
miRNA:   3'- gCCUCCUCCgCuuCuuCAU--AGUGcUG- -5'
31361 3' -52.1 NC_006623.1 + 138515 0.66 0.980384
Target:  5'- gGGGGGGGGgGggGuuGUGuuUCGCuGCc -3'
miRNA:   3'- gCCUCCUCCgCuuCuuCAU--AGUGcUG- -5'
31361 3' -52.1 NC_006623.1 + 134069 0.67 0.975608
Target:  5'- uCGGGGcGAGGCGc-GAcg-AUCACGAUg -3'
miRNA:   3'- -GCCUC-CUCCGCuuCUucaUAGUGCUG- -5'
31361 3' -52.1 NC_006623.1 + 509 0.67 0.972924
Target:  5'- gCGGAGcGAGGU-AGGGAGUGUgGCuGCu -3'
miRNA:   3'- -GCCUC-CUCCGcUUCUUCAUAgUGcUG- -5'
31361 3' -52.1 NC_006623.1 + 125408 0.67 0.9636
Target:  5'- uGGAGGGGGCuuacGGGuuUAUCuGCGACg -3'
miRNA:   3'- gCCUCCUCCGcu--UCUucAUAG-UGCUG- -5'
31361 3' -52.1 NC_006623.1 + 88314 0.68 0.960046
Target:  5'- aCGGGuGGAGGCcaGAGGggGgacuaGCGAUg -3'
miRNA:   3'- -GCCU-CCUCCG--CUUCuuCauag-UGCUG- -5'
31361 3' -52.1 NC_006623.1 + 112993 0.69 0.933706
Target:  5'- gGGAGaacuAGG-GGAGAAGUuUCGCGGCg -3'
miRNA:   3'- gCCUCc---UCCgCUUCUUCAuAGUGCUG- -5'
31361 3' -52.1 NC_006623.1 + 148619 0.69 0.933706
Target:  5'- gGGAGaacuAGG-GGAGAAGUuUCGCGGCg -3'
miRNA:   3'- gCCUCc---UCCgCUUCUUCAuAGUGCUG- -5'
31361 3' -52.1 NC_006623.1 + 39437 0.7 0.89842
Target:  5'- aGGAGGAGGuUGAGGAGGaUAgugaugaggACGACa -3'
miRNA:   3'- gCCUCCUCC-GCUUCUUC-AUag-------UGCUG- -5'
31361 3' -52.1 NC_006623.1 + 1331 0.7 0.891674
Target:  5'- gGGGGGAGGUGggGggGaaggCAgGGa -3'
miRNA:   3'- gCCUCCUCCGCuuCuuCaua-GUgCUg -5'
31361 3' -52.1 NC_006623.1 + 29124 0.71 0.870021
Target:  5'- uGGAGauGGGCGAAGAAGUGUgggcaCAUGAa -3'
miRNA:   3'- gCCUCc-UCCGCUUCUUCAUA-----GUGCUg -5'
31361 3' -52.1 NC_006623.1 + 122036 0.74 0.715363
Target:  5'- gGGGGGGGGCGgcGGGaUGUC-CGGCg -3'
miRNA:   3'- gCCUCCUCCGCuuCUUcAUAGuGCUG- -5'
31361 3' -52.1 NC_006623.1 + 139576 0.74 0.715363
Target:  5'- gGGGGGGGGCGgcGGGaUGUC-CGGCg -3'
miRNA:   3'- gCCUCCUCCGCuuCUUcAUAGuGCUG- -5'
31361 3' -52.1 NC_006623.1 + 114216 0.75 0.653176
Target:  5'- gGGAGGAGGCGGAacGAGGUGUUAa--- -3'
miRNA:   3'- gCCUCCUCCGCUU--CUUCAUAGUgcug -5'
31361 3' -52.1 NC_006623.1 + 147396 0.75 0.653176
Target:  5'- gGGAGGAGGCGGAacGAGGUGUUAa--- -3'
miRNA:   3'- gCCUCCUCCGCUU--CUUCAUAGUgcug -5'
31361 3' -52.1 NC_006623.1 + 19751 1.11 0.005251
Target:  5'- uCGGAGGAGGCGAAGAAGUAUCACGACg -3'
miRNA:   3'- -GCCUCCUCCGCUUCUUCAUAGUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.