miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31362 5' -54.7 NC_006623.1 + 115288 0.66 0.936681
Target:  5'- uGGAGCCACUCCGAAaucGGAaaAGCUUCa -3'
miRNA:   3'- -CUUUGGUGAGGUUU---CCUccUCGGGGg -5'
31362 5' -54.7 NC_006623.1 + 146324 0.66 0.936681
Target:  5'- uGGAGCCACUCCGAAaucGGAaaAGCUUCa -3'
miRNA:   3'- -CUUUGGUGAGGUUU---CCUccUCGGGGg -5'
31362 5' -54.7 NC_006623.1 + 17228 0.66 0.920802
Target:  5'- cGAAGCCcUUCCAAcuGGGcGGuGCCugCCCg -3'
miRNA:   3'- -CUUUGGuGAGGUU--UCCuCCuCGG--GGG- -5'
31362 5' -54.7 NC_006623.1 + 97065 0.66 0.920802
Target:  5'- aGAACUug-CgAAAGGAGGAGCUCUg -3'
miRNA:   3'- cUUUGGugaGgUUUCCUCCUCGGGGg -5'
31362 5' -54.7 NC_006623.1 + 127897 0.67 0.915019
Target:  5'- cAAACCACcgCCAGAgcgguguuGGAGGccacuauGCCCCg -3'
miRNA:   3'- cUUUGGUGa-GGUUU--------CCUCCu------CGGGGg -5'
31362 5' -54.7 NC_006623.1 + 28338 0.67 0.915019
Target:  5'- -cAGCCACUCCGaccgGAGuGGGAGUUCUUa -3'
miRNA:   3'- cuUUGGUGAGGU----UUCcUCCUCGGGGG- -5'
31362 5' -54.7 NC_006623.1 + 110884 0.67 0.908991
Target:  5'- --uGCCugUCCGAGaugcuGGGGA-CCCCCu -3'
miRNA:   3'- cuuUGGugAGGUUUc----CUCCUcGGGGG- -5'
31362 5' -54.7 NC_006623.1 + 82060 0.67 0.896213
Target:  5'- aGAAACgGuaggugcucucuCUCCGAAGGuGGAGaucguaaCCCCu -3'
miRNA:   3'- -CUUUGgU------------GAGGUUUCCuCCUCg------GGGG- -5'
31362 5' -54.7 NC_006623.1 + 73445 0.67 0.890152
Target:  5'- -cAGCCAUgcacgaauuuuuggCGGAGGAGGAGCgCCUCa -3'
miRNA:   3'- cuUUGGUGag------------GUUUCCUCCUCG-GGGG- -5'
31362 5' -54.7 NC_006623.1 + 2212 0.68 0.867854
Target:  5'- ---cCUGCUCCAAAGGcaccguuguGGAGCCUgCg -3'
miRNA:   3'- cuuuGGUGAGGUUUCCu--------CCUCGGGgG- -5'
31362 5' -54.7 NC_006623.1 + 130449 0.68 0.85235
Target:  5'- -uAugCGCga-GGGGGAGGGGCCgCCg -3'
miRNA:   3'- cuUugGUGaggUUUCCUCCUCGGgGG- -5'
31362 5' -54.7 NC_006623.1 + 35311 0.68 0.844287
Target:  5'- cGAGCUAUUCCAcuucuacGGAGGAGUCCa- -3'
miRNA:   3'- cUUUGGUGAGGUuu-----CCUCCUCGGGgg -5'
31362 5' -54.7 NC_006623.1 + 10422 0.69 0.80116
Target:  5'- gGggGCCAUUCuCAGAucaacGAuGGGCCCCCa -3'
miRNA:   3'- -CuuUGGUGAG-GUUUc----CUcCUCGGGGG- -5'
31362 5' -54.7 NC_006623.1 + 115958 0.7 0.75412
Target:  5'- cGAGCCGCUCCAAAGcAGGAcGCgCgCg -3'
miRNA:   3'- cUUUGGUGAGGUUUCcUCCU-CGgGgG- -5'
31362 5' -54.7 NC_006623.1 + 145654 0.7 0.75412
Target:  5'- cGAGCCGCUCCAAAGcAGGAcGCgCgCg -3'
miRNA:   3'- cUUUGGUGAGGUUUCcUCCU-CGgGgG- -5'
31362 5' -54.7 NC_006623.1 + 56413 0.72 0.673615
Target:  5'- uGGGAUaUAUUCCcuucGGGAGGAGCCCCa -3'
miRNA:   3'- -CUUUG-GUGAGGuu--UCCUCCUCGGGGg -5'
31362 5' -54.7 NC_006623.1 + 80857 0.72 0.652954
Target:  5'- uGAGAUUGCUCCugcGGucGGAGCCCCg -3'
miRNA:   3'- -CUUUGGUGAGGuuuCCu-CCUCGGGGg -5'
31362 5' -54.7 NC_006623.1 + 124606 0.72 0.632225
Target:  5'- cAAGCCGCUCCAcucGGGAcuuacuccaggcGGGucGCCCCCc -3'
miRNA:   3'- cUUUGGUGAGGUu--UCCU------------CCU--CGGGGG- -5'
31362 5' -54.7 NC_006623.1 + 20001 1.12 0.002331
Target:  5'- aGAAACCACUCCAAAGGAGGAGCCCCCu -3'
miRNA:   3'- -CUUUGGUGAGGUUUCCUCCUCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.