miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31364 5' -58 NC_006623.1 + 111666 0.66 0.790278
Target:  5'- ---cCGccGGGCCGCUGCCauuucaacgaacgggCCcgaugGCGCu -3'
miRNA:   3'- aauaGUuaCCCGGCGACGG---------------GGa----CGCG- -5'
31364 5' -58 NC_006623.1 + 140322 0.67 0.748611
Target:  5'- ---aCGAUccGGGUCGCUGUCCCcGCa- -3'
miRNA:   3'- aauaGUUA--CCCGGCGACGGGGaCGcg -5'
31364 5' -58 NC_006623.1 + 121290 0.67 0.748611
Target:  5'- ---aCGAUccGGGUCGCUGUCCCcGCa- -3'
miRNA:   3'- aauaGUUA--CCCGGCGACGGGGaCGcg -5'
31364 5' -58 NC_006623.1 + 122966 0.67 0.738831
Target:  5'- -cGUCAAcGGcGCCGCgccaGCgCCaGCGCg -3'
miRNA:   3'- aaUAGUUaCC-CGGCGa---CGgGGaCGCG- -5'
31364 5' -58 NC_006623.1 + 138646 0.67 0.738831
Target:  5'- -cGUCAAcGGcGCCGCgccaGCgCCaGCGCg -3'
miRNA:   3'- aaUAGUUaCC-CGGCGa---CGgGGaCGCG- -5'
31364 5' -58 NC_006623.1 + 46018 0.67 0.728958
Target:  5'- -aGUCGAUGGgggugcGCCGgaGCCCggcgaGCGCg -3'
miRNA:   3'- aaUAGUUACC------CGGCgaCGGGga---CGCG- -5'
31364 5' -58 NC_006623.1 + 124330 0.67 0.708966
Target:  5'- -cGUCGGc-GGCCGCUGCCggaauaguggCCUGgGCc -3'
miRNA:   3'- aaUAGUUacCCGGCGACGG----------GGACgCG- -5'
31364 5' -58 NC_006623.1 + 137282 0.67 0.708966
Target:  5'- -cGUCGGc-GGCCGCUGCCggaauaguggCCUGgGCc -3'
miRNA:   3'- aaUAGUUacCCGGCGACGG----------GGACgCG- -5'
31364 5' -58 NC_006623.1 + 93174 0.67 0.705943
Target:  5'- -gGUCucuGUGGacaccucggagaauGuuGCUGCCCCUGCu- -3'
miRNA:   3'- aaUAGu--UACC--------------CggCGACGGGGACGcg -5'
31364 5' -58 NC_006623.1 + 9362 0.69 0.627078
Target:  5'- -gGUUuuUGGGagaauaGCUGCCCCUGCu- -3'
miRNA:   3'- aaUAGuuACCCgg----CGACGGGGACGcg -5'
31364 5' -58 NC_006623.1 + 101465 1.09 0.001437
Target:  5'- aUUAUCAAUGGGCCGCUGCCCCUGCGCu -3'
miRNA:   3'- -AAUAGUUACCCGGCGACGGGGACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.