miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31365 3' -49.3 NC_006623.1 + 137157 0.66 0.99815
Target:  5'- cGGAGGGGAg--CgGUGCccCUCCGAa -3'
miRNA:   3'- -CCUUUCUUauaGgCACGucGAGGCUg -5'
31365 3' -49.3 NC_006623.1 + 146574 0.66 0.997783
Target:  5'- cGGAAAGG---UCCGgacaugGCGGCaucgccCCGGCg -3'
miRNA:   3'- -CCUUUCUuauAGGCa-----CGUCGa-----GGCUG- -5'
31365 3' -49.3 NC_006623.1 + 2063 0.66 0.997783
Target:  5'- cGAGuGAAUGggcuuguacUuuGUGCggaaaAGCUCCGACa -3'
miRNA:   3'- cCUUuCUUAU---------AggCACG-----UCGAGGCUG- -5'
31365 3' -49.3 NC_006623.1 + 115038 0.66 0.997783
Target:  5'- cGGAAAGG---UCCGgacaugGCGGCaucgccCCGGCg -3'
miRNA:   3'- -CCUUUCUuauAGGCa-----CGUCGa-----GGCUG- -5'
31365 3' -49.3 NC_006623.1 + 25254 0.66 0.997356
Target:  5'- uGGAGGGAGUAaCCGacacggUGCuGGUUuuGACg -3'
miRNA:   3'- -CCUUUCUUAUaGGC------ACG-UCGAggCUG- -5'
31365 3' -49.3 NC_006623.1 + 43580 0.67 0.995651
Target:  5'- cGGggGGAA-GUCuCGUaGCAGCaCCGGa -3'
miRNA:   3'- -CCuuUCUUaUAG-GCA-CGUCGaGGCUg -5'
31365 3' -49.3 NC_006623.1 + 131807 0.67 0.995651
Target:  5'- aGGccAGGggUGugcUCUGUGCAGUUuCUGGCa -3'
miRNA:   3'- -CCu-UUCuuAU---AGGCACGUCGA-GGCUG- -5'
31365 3' -49.3 NC_006623.1 + 32509 0.67 0.993139
Target:  5'- ---cAGAAUGUCgGUGguGCUCUuACu -3'
miRNA:   3'- ccuuUCUUAUAGgCACguCGAGGcUG- -5'
31365 3' -49.3 NC_006623.1 + 120791 0.68 0.986503
Target:  5'- -uGGAGAGUAUCgGUcacGCAGCcUCCGGa -3'
miRNA:   3'- ccUUUCUUAUAGgCA---CGUCG-AGGCUg -5'
31365 3' -49.3 NC_006623.1 + 140820 0.68 0.986503
Target:  5'- -uGGAGAGUAUCgGUcacGCAGCcUCCGGa -3'
miRNA:   3'- ccUUUCUUAUAGgCA---CGUCG-AGGCUg -5'
31365 3' -49.3 NC_006623.1 + 58515 0.69 0.980634
Target:  5'- cGGAGuguAGAcUGUCUG-GCAGCUCCu-- -3'
miRNA:   3'- -CCUU---UCUuAUAGGCaCGUCGAGGcug -5'
31365 3' -49.3 NC_006623.1 + 2468 0.71 0.94743
Target:  5'- aGGAAAGAGUGaccUCGUGCAGauaUCCcGCa -3'
miRNA:   3'- -CCUUUCUUAUa--GGCACGUCg--AGGcUG- -5'
31365 3' -49.3 NC_006623.1 + 18396 0.72 0.937871
Target:  5'- cGAgcGA----UCGUGUAGCUCCGACg -3'
miRNA:   3'- cCUuuCUuauaGGCACGUCGAGGCUG- -5'
31365 3' -49.3 NC_006623.1 + 117565 0.72 0.91561
Target:  5'- aGGGAGGAuUGUCuCGUucuGCGGUgCCGACg -3'
miRNA:   3'- -CCUUUCUuAUAG-GCA---CGUCGaGGCUG- -5'
31365 3' -49.3 NC_006623.1 + 144047 0.72 0.91561
Target:  5'- aGGGAGGAuUGUCuCGUucuGCGGUgCCGACg -3'
miRNA:   3'- -CCUUUCUuAUAG-GCA---CGUCGaGGCUG- -5'
31365 3' -49.3 NC_006623.1 + 109869 1.14 0.006386
Target:  5'- uGGAAAGAAUAUCCGUGCAGCUCCGACg -3'
miRNA:   3'- -CCUUUCUUAUAGGCACGUCGAGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.