Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31365 | 3' | -49.3 | NC_006623.1 | + | 146574 | 0.66 | 0.997783 |
Target: 5'- cGGAAAGG---UCCGgacaugGCGGCaucgccCCGGCg -3' miRNA: 3'- -CCUUUCUuauAGGCa-----CGUCGa-----GGCUG- -5' |
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31365 | 3' | -49.3 | NC_006623.1 | + | 144047 | 0.72 | 0.91561 |
Target: 5'- aGGGAGGAuUGUCuCGUucuGCGGUgCCGACg -3' miRNA: 3'- -CCUUUCUuAUAG-GCA---CGUCGaGGCUG- -5' |
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31365 | 3' | -49.3 | NC_006623.1 | + | 140820 | 0.68 | 0.986503 |
Target: 5'- -uGGAGAGUAUCgGUcacGCAGCcUCCGGa -3' miRNA: 3'- ccUUUCUUAUAGgCA---CGUCG-AGGCUg -5' |
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31365 | 3' | -49.3 | NC_006623.1 | + | 137157 | 0.66 | 0.99815 |
Target: 5'- cGGAGGGGAg--CgGUGCccCUCCGAa -3' miRNA: 3'- -CCUUUCUUauaGgCACGucGAGGCUg -5' |
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31365 | 3' | -49.3 | NC_006623.1 | + | 131807 | 0.67 | 0.995651 |
Target: 5'- aGGccAGGggUGugcUCUGUGCAGUUuCUGGCa -3' miRNA: 3'- -CCu-UUCuuAU---AGGCACGUCGA-GGCUG- -5' |
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31365 | 3' | -49.3 | NC_006623.1 | + | 120791 | 0.68 | 0.986503 |
Target: 5'- -uGGAGAGUAUCgGUcacGCAGCcUCCGGa -3' miRNA: 3'- ccUUUCUUAUAGgCA---CGUCG-AGGCUg -5' |
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31365 | 3' | -49.3 | NC_006623.1 | + | 117565 | 0.72 | 0.91561 |
Target: 5'- aGGGAGGAuUGUCuCGUucuGCGGUgCCGACg -3' miRNA: 3'- -CCUUUCUuAUAG-GCA---CGUCGaGGCUG- -5' |
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31365 | 3' | -49.3 | NC_006623.1 | + | 115038 | 0.66 | 0.997783 |
Target: 5'- cGGAAAGG---UCCGgacaugGCGGCaucgccCCGGCg -3' miRNA: 3'- -CCUUUCUuauAGGCa-----CGUCGa-----GGCUG- -5' |
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31365 | 3' | -49.3 | NC_006623.1 | + | 109869 | 1.14 | 0.006386 |
Target: 5'- uGGAAAGAAUAUCCGUGCAGCUCCGACg -3' miRNA: 3'- -CCUUUCUUAUAGGCACGUCGAGGCUG- -5' |
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31365 | 3' | -49.3 | NC_006623.1 | + | 58515 | 0.69 | 0.980634 |
Target: 5'- cGGAGuguAGAcUGUCUG-GCAGCUCCu-- -3' miRNA: 3'- -CCUU---UCUuAUAGGCaCGUCGAGGcug -5' |
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31365 | 3' | -49.3 | NC_006623.1 | + | 43580 | 0.67 | 0.995651 |
Target: 5'- cGGggGGAA-GUCuCGUaGCAGCaCCGGa -3' miRNA: 3'- -CCuuUCUUaUAG-GCA-CGUCGaGGCUg -5' |
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31365 | 3' | -49.3 | NC_006623.1 | + | 32509 | 0.67 | 0.993139 |
Target: 5'- ---cAGAAUGUCgGUGguGCUCUuACu -3' miRNA: 3'- ccuuUCUUAUAGgCACguCGAGGcUG- -5' |
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31365 | 3' | -49.3 | NC_006623.1 | + | 25254 | 0.66 | 0.997356 |
Target: 5'- uGGAGGGAGUAaCCGacacggUGCuGGUUuuGACg -3' miRNA: 3'- -CCUUUCUUAUaGGC------ACG-UCGAggCUG- -5' |
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31365 | 3' | -49.3 | NC_006623.1 | + | 18396 | 0.72 | 0.937871 |
Target: 5'- cGAgcGA----UCGUGUAGCUCCGACg -3' miRNA: 3'- cCUuuCUuauaGGCACGUCGAGGCUG- -5' |
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31365 | 3' | -49.3 | NC_006623.1 | + | 2468 | 0.71 | 0.94743 |
Target: 5'- aGGAAAGAGUGaccUCGUGCAGauaUCCcGCa -3' miRNA: 3'- -CCUUUCUUAUa--GGCACGUCg--AGGcUG- -5' |
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31365 | 3' | -49.3 | NC_006623.1 | + | 2063 | 0.66 | 0.997783 |
Target: 5'- cGAGuGAAUGggcuuguacUuuGUGCggaaaAGCUCCGACa -3' miRNA: 3'- cCUUuCUUAU---------AggCACG-----UCGAGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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