miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
31365	5'	-54.5	NC_006623.1	+	93197	0.66	0.92636
	Target:  5'- aUGUUGcuGCCCCUGCuguucaaaguccuGCGGGggugACACAa -3' miRNA:   3'- aAUAAU--CGGGGGCG-------------CGCCUa---UGUGUa -5'
31365	5'	-54.5	NC_006623.1	+	116000	0.66	0.921276
	Target:  5'- ---aUGGCUCCCcUGCGGAgaGCGCAa -3' miRNA:   3'- aauaAUCGGGGGcGCGCCUa-UGUGUa -5'
31365	5'	-54.5	NC_006623.1	+	145612	0.66	0.921276
	Target:  5'- ---aUGGCUCCCcUGCGGAgaGCGCAa -3' miRNA:   3'- aauaAUCGGGGGcGCGCCUa-UGUGUa -5'
31365	5'	-54.5	NC_006623.1	+	124	0.72	0.625568
	Target:  5'- --uUUGGCCCCCugccaGCGCGGcccugcguucGUGCGCAg -3' miRNA:   3'- aauAAUCGGGGG-----CGCGCC----------UAUGUGUa -5'
31365	5'	-54.5	NC_006623.1	+	51368	0.73	0.551991
	Target:  5'- ---aUGGCCCCCGUaauaccuucucGuCGGAUGCGCAg -3' miRNA:   3'- aauaAUCGGGGGCG-----------C-GCCUAUGUGUa -5'
31365	5'	-54.5	NC_006623.1	+	11083	0.75	0.442821
	Target:  5'- ---aUGGCCUCUGauCGCGGAUACACAa -3' miRNA:   3'- aauaAUCGGGGGC--GCGCCUAUGUGUa -5'
31365	5'	-54.5	NC_006623.1	+	109903	1.04	0.006514
	Target:  5'- cUUAUUAGCCCCCGCGCGGAUACACAUg -3' miRNA:   3'- -AAUAAUCGGGGGCGCGCCUAUGUGUA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home