miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31366 3' -63.9 NC_006623.1 + 130422 0.66 0.522385
Target:  5'- uCGCCGGCGgacUCCGgCAGCgUCCUCGc -3'
miRNA:   3'- uGCGGUCGC---AGGCgGUUGgGGGGGUu -5'
31366 3' -63.9 NC_006623.1 + 115222 0.66 0.493417
Target:  5'- gGCGCCggGGCGaugCCGCCAuguccggACCUUUCCGAg -3'
miRNA:   3'- -UGCGG--UCGCa--GGCGGU-------UGGGGGGGUU- -5'
31366 3' -63.9 NC_006623.1 + 146390 0.66 0.493417
Target:  5'- gGCGCCggGGCGaugCCGCCAuguccggACCUUUCCGAg -3'
miRNA:   3'- -UGCGG--UCGCa--GGCGGU-------UGGGGGGGUU- -5'
31366 3' -63.9 NC_006623.1 + 146738 0.67 0.449219
Target:  5'- gGCGCUGGCGgccgcgCCGCUuuCCaCCUCCGg -3'
miRNA:   3'- -UGCGGUCGCa-----GGCGGuuGG-GGGGGUu -5'
31366 3' -63.9 NC_006623.1 + 139086 0.67 0.449219
Target:  5'- -gGCCGaccucGCGUCCGCCGAgcgagagaCCUCCCGGu -3'
miRNA:   3'- ugCGGU-----CGCAGGCGGUUg-------GGGGGGUU- -5'
31366 3' -63.9 NC_006623.1 + 122526 0.67 0.449219
Target:  5'- -gGCCGaccucGCGUCCGCCGAgcgagagaCCUCCCGGu -3'
miRNA:   3'- ugCGGU-----CGCAGGCGGUUg-------GGGGGGUU- -5'
31366 3' -63.9 NC_006623.1 + 114873 0.67 0.449219
Target:  5'- gGCGCUGGCGgccgcgCCGCUuuCCaCCUCCGg -3'
miRNA:   3'- -UGCGGUCGCa-----GGCGGuuGG-GGGGGUu -5'
31366 3' -63.9 NC_006623.1 + 116606 0.67 0.440468
Target:  5'- -gGCaAGuCGUCCGCCGGCCgCCUCGu -3'
miRNA:   3'- ugCGgUC-GCAGGCGGUUGGgGGGGUu -5'
31366 3' -63.9 NC_006623.1 + 145006 0.67 0.440468
Target:  5'- -gGCaAGuCGUCCGCCGGCCgCCUCGu -3'
miRNA:   3'- ugCGgUC-GCAGGCGGUUGGgGGGGUu -5'
31366 3' -63.9 NC_006623.1 + 110349 0.68 0.397406
Target:  5'- -aGCCAGCGgCUGCgggcucuCGGCCCUCCCGc -3'
miRNA:   3'- ugCGGUCGCaGGCG-------GUUGGGGGGGUu -5'
31366 3' -63.9 NC_006623.1 + 121847 0.73 0.208289
Target:  5'- cGCGCCccuuuGCGaCCGCCGgacaucccgccGCCCCCCCc- -3'
miRNA:   3'- -UGCGGu----CGCaGGCGGU-----------UGGGGGGGuu -5'
31366 3' -63.9 NC_006623.1 + 139764 0.73 0.208289
Target:  5'- cGCGCCccuuuGCGaCCGCCGgacaucccgccGCCCCCCCc- -3'
miRNA:   3'- -UGCGGu----CGCaGGCGGU-----------UGGGGGGGuu -5'
31366 3' -63.9 NC_006623.1 + 122310 0.74 0.179918
Target:  5'- gGCGUCgacggagAGCGU-CGCCAACUCCCCCAc -3'
miRNA:   3'- -UGCGG-------UCGCAgGCGGUUGGGGGGGUu -5'
31366 3' -63.9 NC_006623.1 + 146555 0.74 0.179918
Target:  5'- cGCGCCggagguggaaagcGGCGcggCCGCCAGCgCCUCCCGAu -3'
miRNA:   3'- -UGCGG-------------UCGCa--GGCGGUUG-GGGGGGUU- -5'
31366 3' -63.9 NC_006623.1 + 139302 0.74 0.179918
Target:  5'- gGCGUCgacggagAGCGU-CGCCAACUCCCCCAc -3'
miRNA:   3'- -UGCGG-------UCGCAgGCGGUUGGGGGGGUu -5'
31366 3' -63.9 NC_006623.1 + 115057 0.74 0.179918
Target:  5'- cGCGCCggagguggaaagcGGCGcggCCGCCAGCgCCUCCCGAu -3'
miRNA:   3'- -UGCGG-------------UCGCa--GGCGGUUG-GGGGGGUU- -5'
31366 3' -63.9 NC_006623.1 + 29788 0.75 0.137679
Target:  5'- -aGCCGGCGUCUGacuGCCCCCCUAGu -3'
miRNA:   3'- ugCGGUCGCAGGCgguUGGGGGGGUU- -5'
31366 3' -63.9 NC_006623.1 + 138890 0.83 0.037083
Target:  5'- cGCGCCGGCGcggcugCCGCCAACUCUCCCGAa -3'
miRNA:   3'- -UGCGGUCGCa-----GGCGGUUGGGGGGGUU- -5'
31366 3' -63.9 NC_006623.1 + 122722 0.83 0.037083
Target:  5'- cGCGCCGGCGcggcugCCGCCAACUCUCCCGAa -3'
miRNA:   3'- -UGCGGUCGCa-----GGCGGUUGGGGGGGUU- -5'
31366 3' -63.9 NC_006623.1 + 112157 1.05 0.000912
Target:  5'- aACGCCAGCGUCCGCCAACCCCCCCAAa -3'
miRNA:   3'- -UGCGGUCGCAGGCGGUUGGGGGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.