miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31366 5' -56.1 NC_006623.1 + 17439 0.66 0.90985
Target:  5'- uGCCCGcGaGGAGCAGagGCGGUUuuGCGg -3'
miRNA:   3'- -UGGGCaCcUCUCGUU--UGCCAGu-CGCg -5'
31366 5' -56.1 NC_006623.1 + 122902 0.66 0.897316
Target:  5'- cUUCG-GGAGAGUuGGCGG-CAGcCGCg -3'
miRNA:   3'- uGGGCaCCUCUCGuUUGCCaGUC-GCG- -5'
31366 5' -56.1 NC_006623.1 + 111943 0.67 0.876795
Target:  5'- aACCCGgGGGGGGUGuuuuGCGGggGGgGCu -3'
miRNA:   3'- -UGGGCaCCUCUCGUu---UGCCagUCgCG- -5'
31366 5' -56.1 NC_006623.1 + 581 0.67 0.869513
Target:  5'- cCCUGUGGaAGAGCGGAaagGGUCAaugggaagGgGCa -3'
miRNA:   3'- uGGGCACC-UCUCGUUUg--CCAGU--------CgCG- -5'
31366 5' -56.1 NC_006623.1 + 139938 0.67 0.838312
Target:  5'- gACgCG-GGGGAuaGCAAAUGGcggCGGCGCc -3'
miRNA:   3'- -UGgGCaCCUCU--CGUUUGCCa--GUCGCG- -5'
31366 5' -56.1 NC_006623.1 + 121674 0.67 0.838312
Target:  5'- gACgCG-GGGGAuaGCAAAUGGcggCGGCGCc -3'
miRNA:   3'- -UGgGCaCCUCU--CGUUUGCCa--GUCGCG- -5'
31366 5' -56.1 NC_006623.1 + 131393 0.68 0.830027
Target:  5'- cGCCgCGcucGGAGcGCGAGCGGUUucggggGGCGUg -3'
miRNA:   3'- -UGG-GCa--CCUCuCGUUUGCCAG------UCGCG- -5'
31366 5' -56.1 NC_006623.1 + 139561 0.68 0.804123
Target:  5'- uACCuCGUGGcGAGCGcaGGCGGcaaGGUGCc -3'
miRNA:   3'- -UGG-GCACCuCUCGU--UUGCCag-UCGCG- -5'
31366 5' -56.1 NC_006623.1 + 122051 0.68 0.804123
Target:  5'- uACCuCGUGGcGAGCGcaGGCGGcaaGGUGCc -3'
miRNA:   3'- -UGG-GCACCuCUCGU--UUGCCag-UCGCG- -5'
31366 5' -56.1 NC_006623.1 + 140834 0.73 0.556665
Target:  5'- aACCCGcgaugucuUGGAGAGUAu-CGGUCA-CGCa -3'
miRNA:   3'- -UGGGC--------ACCUCUCGUuuGCCAGUcGCG- -5'
31366 5' -56.1 NC_006623.1 + 120777 0.73 0.556665
Target:  5'- aACCCGcgaugucuUGGAGAGUAu-CGGUCA-CGCa -3'
miRNA:   3'- -UGGGC--------ACCUCUCGUuuGCCAGUcGCG- -5'
31366 5' -56.1 NC_006623.1 + 101670 0.73 0.507291
Target:  5'- uACCCGUGuuGGGUguggcggaaGAGCGG-CAGCGCa -3'
miRNA:   3'- -UGGGCACcuCUCG---------UUUGCCaGUCGCG- -5'
31366 5' -56.1 NC_006623.1 + 123676 0.75 0.41491
Target:  5'- aGCCCGgGGAGGggcGCAcucGCGGUCcGCGCa -3'
miRNA:   3'- -UGGGCaCCUCU---CGUu--UGCCAGuCGCG- -5'
31366 5' -56.1 NC_006623.1 + 137936 0.75 0.41491
Target:  5'- aGCCCGgGGAGGggcGCAcucGCGGUCcGCGCa -3'
miRNA:   3'- -UGGGCaCCUCU---CGUu--UGCCAGuCGCG- -5'
31366 5' -56.1 NC_006623.1 + 112192 1.12 0.00179
Target:  5'- cACCCGUGGAGAGCAAACGGUCAGCGCg -3'
miRNA:   3'- -UGGGCACCUCUCGUUUGCCAGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.