miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31367 3' -50 NC_006623.1 + 98837 0.66 0.995333
Target:  5'- aUCUUGCcuCGAUAaugcggcauAGCGCUugGCUGc- -3'
miRNA:   3'- -AGAACGu-GUUAU---------UCGCGGugUGACcu -5'
31367 3' -50 NC_006623.1 + 80738 0.66 0.993658
Target:  5'- ---aGCACua-GAGCGUguuuacacgCGCACUGGAg -3'
miRNA:   3'- agaaCGUGuuaUUCGCG---------GUGUGACCU- -5'
31367 3' -50 NC_006623.1 + 118086 0.67 0.991532
Target:  5'- --cUGCcCAAUuAGUGCUAC-CUGGAg -3'
miRNA:   3'- agaACGuGUUAuUCGCGGUGuGACCU- -5'
31367 3' -50 NC_006623.1 + 143526 0.67 0.991532
Target:  5'- --cUGCcCAAUuAGUGCUAC-CUGGAg -3'
miRNA:   3'- agaACGuGUUAuUCGCGGUGuGACCU- -5'
31367 3' -50 NC_006623.1 + 111881 0.67 0.991532
Target:  5'- ---aGCGCAugcAGUGCCGCGCgcgagGGGu -3'
miRNA:   3'- agaaCGUGUuauUCGCGGUGUGa----CCU- -5'
31367 3' -50 NC_006623.1 + 137182 0.67 0.988878
Target:  5'- ---gGCACGGUcgAGGCGCCAuCGCUcGGc -3'
miRNA:   3'- agaaCGUGUUA--UUCGCGGU-GUGA-CCu -5'
31367 3' -50 NC_006623.1 + 66106 0.67 0.987329
Target:  5'- ---aGCAUAAUcuGUuaucaGCCGCGCUGGGg -3'
miRNA:   3'- agaaCGUGUUAuuCG-----CGGUGUGACCU- -5'
31367 3' -50 NC_006623.1 + 131225 0.67 0.987329
Target:  5'- gCUcGCGCuccGAGCGCgGCGCcGGAg -3'
miRNA:   3'- aGAaCGUGuuaUUCGCGgUGUGaCCU- -5'
31367 3' -50 NC_006623.1 + 142787 0.68 0.983737
Target:  5'- uUUUUGCGCGccgauaagaGUGGGCGCUACGauucuUUGGGu -3'
miRNA:   3'- -AGAACGUGU---------UAUUCGCGGUGU-----GACCU- -5'
31367 3' -50 NC_006623.1 + 118824 0.68 0.983737
Target:  5'- uUUUUGCGCGccgauaagaGUGGGCGCUACGauucuUUGGGu -3'
miRNA:   3'- -AGAACGUGU---------UAUUCGCGGUGU-----GACCU- -5'
31367 3' -50 NC_006623.1 + 102396 0.68 0.981675
Target:  5'- gCUUGCGCGGguUAAGCGaa--GCUGGGa -3'
miRNA:   3'- aGAACGUGUU--AUUCGCggugUGACCU- -5'
31367 3' -50 NC_006623.1 + 112623 0.68 0.979423
Target:  5'- uUCUUGC-CAGcGAGCGUU--GCUGGAa -3'
miRNA:   3'- -AGAACGuGUUaUUCGCGGugUGACCU- -5'
31367 3' -50 NC_006623.1 + 25025 0.68 0.976972
Target:  5'- cUCcgUGCGCAAUAuGCGCCcgcCACUGc- -3'
miRNA:   3'- -AGa-ACGUGUUAUuCGCGGu--GUGACcu -5'
31367 3' -50 NC_006623.1 + 49176 0.69 0.971435
Target:  5'- ---cGCACGAccc-CGCCGCACUGGc -3'
miRNA:   3'- agaaCGUGUUauucGCGGUGUGACCu -5'
31367 3' -50 NC_006623.1 + 129820 0.69 0.966363
Target:  5'- cUUUGCGCAuucgcuacGGCGCUacggaggacgaacuuGCACUGGAg -3'
miRNA:   3'- aGAACGUGUuau-----UCGCGG---------------UGUGACCU- -5'
31367 3' -50 NC_006623.1 + 472 0.69 0.965002
Target:  5'- ---cGCGCuuuuaauGGCGCuCGCGCUGGGu -3'
miRNA:   3'- agaaCGUGuuau---UCGCG-GUGUGACCU- -5'
31367 3' -50 NC_006623.1 + 80065 0.69 0.965002
Target:  5'- uUCUUGCAaucAUGGGauuaGCCACuacaaACUGGAu -3'
miRNA:   3'- -AGAACGUgu-UAUUCg---CGGUG-----UGACCU- -5'
31367 3' -50 NC_006623.1 + 310 0.7 0.934693
Target:  5'- --cUGCGCAcgAacgcAGgGCCGCGCUGGc -3'
miRNA:   3'- agaACGUGUuaU----UCgCGGUGUGACCu -5'
31367 3' -50 NC_006623.1 + 899 0.71 0.929318
Target:  5'- ---gGUACGGcGGGCGCCGCAUcGGAg -3'
miRNA:   3'- agaaCGUGUUaUUCGCGGUGUGaCCU- -5'
31367 3' -50 NC_006623.1 + 112415 1.11 0.007147
Target:  5'- uUCUUGCACAAUAAGCGCCACACUGGAa -3'
miRNA:   3'- -AGAACGUGUUAUUCGCGGUGUGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.