miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31368 5' -49.8 NC_006623.1 + 137721 0.66 0.996463
Target:  5'- gGCUAGcGCGCcGUcgcAGCGgCgguagGACUGUGg -3'
miRNA:   3'- -CGAUU-CGCGuCA---UCGUgGa----UUGACAC- -5'
31368 5' -49.8 NC_006623.1 + 142000 0.66 0.996463
Target:  5'- uGCUGGGCGCA-UGGCAUgcaUUGGCUaUGg -3'
miRNA:   3'- -CGAUUCGCGUcAUCGUG---GAUUGAcAC- -5'
31368 5' -49.8 NC_006623.1 + 104197 0.66 0.996463
Target:  5'- uCUGGGCGCGGUcaCAUCUAGaucccugcuCUGUGa -3'
miRNA:   3'- cGAUUCGCGUCAucGUGGAUU---------GACAC- -5'
31368 5' -49.8 NC_006623.1 + 119612 0.66 0.996463
Target:  5'- uGCUGGGCGCA-UGGCAUgcaUUGGCUaUGg -3'
miRNA:   3'- -CGAUUCGCGUcAUCGUG---GAUUGAcAC- -5'
31368 5' -49.8 NC_006623.1 + 65073 0.66 0.995833
Target:  5'- --aAAG-GCAGcUAGCGCCgu-CUGUGg -3'
miRNA:   3'- cgaUUCgCGUC-AUCGUGGauuGACAC- -5'
31368 5' -49.8 NC_006623.1 + 81549 0.66 0.995115
Target:  5'- gGCUAguAGCGCAGU-GCAUCaaUAGCUa-- -3'
miRNA:   3'- -CGAU--UCGCGUCAuCGUGG--AUUGAcac -5'
31368 5' -49.8 NC_006623.1 + 85349 0.66 0.993376
Target:  5'- gGgUGAGCcauuGCAGUuccaGGCugCcGACUGUGg -3'
miRNA:   3'- -CgAUUCG----CGUCA----UCGugGaUUGACAC- -5'
31368 5' -49.8 NC_006623.1 + 93377 0.67 0.992338
Target:  5'- aGUUGAGC-CAGUGGCugCUAGaaGg- -3'
miRNA:   3'- -CGAUUCGcGUCAUCGugGAUUgaCac -5'
31368 5' -49.8 NC_006623.1 + 30163 0.67 0.988431
Target:  5'- uGCUGugcGCGCGGUGgauGUAUUUGGCUGUc -3'
miRNA:   3'- -CGAUu--CGCGUCAU---CGUGGAUUGACAc -5'
31368 5' -49.8 NC_006623.1 + 123891 0.72 0.889101
Target:  5'- gGCUAAGCGCGccGUcgcAGCGgCgguagGACUGUGg -3'
miRNA:   3'- -CGAUUCGCGU--CA---UCGUgGa----UUGACAC- -5'
31368 5' -49.8 NC_006623.1 + 112860 0.81 0.442457
Target:  5'- aGCUAAGUGCuuaaccugAGUAGCACCUAAUUGc- -3'
miRNA:   3'- -CGAUUCGCG--------UCAUCGUGGAUUGACac -5'
31368 5' -49.8 NC_006623.1 + 112710 1.11 0.007441
Target:  5'- aGCUAAGCGCAGUAGCACCUAACUGUGc -3'
miRNA:   3'- -CGAUUCGCGUCAUCGUGGAUUGACAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.