miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3137 5' -47.2 NC_001493.1 + 123063 0.67 0.999251
Target:  5'- cCCGGu-GGAUCGGgA-GGGCGGACUc -3'
miRNA:   3'- uGGCUuuCUUAGCCgUaUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 109866 0.67 0.999251
Target:  5'- cACUGGAGGAGaacuUCGGCcucGAGCGcGCCc -3'
miRNA:   3'- -UGGCUUUCUU----AGCCGua-UUUGCcUGG- -5'
3137 5' -47.2 NC_001493.1 + 80794 0.67 0.999076
Target:  5'- uACCGugcGAAGAAcCGcGCuguuGCGGACCc -3'
miRNA:   3'- -UGGC---UUUCUUaGC-CGuauuUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 127718 0.67 0.999076
Target:  5'- gUCGAGGGAggCGGgaAUAGAUGGugGCCg -3'
miRNA:   3'- uGGCUUUCUuaGCCg-UAUUUGCC--UGG- -5'
3137 5' -47.2 NC_001493.1 + 103774 0.67 0.999076
Target:  5'- aGCCGGAGGAGagacccUGGUc---ACGGACCu -3'
miRNA:   3'- -UGGCUUUCUUa-----GCCGuauuUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 112175 0.68 0.998867
Target:  5'- gACCGAuc--AUC-GCGUuuGCGGGCCg -3'
miRNA:   3'- -UGGCUuucuUAGcCGUAuuUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 29300 0.68 0.998867
Target:  5'- gGCCGAAcgcGGGGgcaCGGCc----CGGACCa -3'
miRNA:   3'- -UGGCUU---UCUUa--GCCGuauuuGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 55984 0.68 0.998797
Target:  5'- uCCGuGAuGGUCGGUGaugggaugaaaaccUGGACGGACCg -3'
miRNA:   3'- uGGCuUUcUUAGCCGU--------------AUUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 58680 0.68 0.998723
Target:  5'- cACCGAAGGGguuccgucccgcgguGacacacaccuguUCGGCc--AACGGACCg -3'
miRNA:   3'- -UGGCUUUCU---------------U------------AGCCGuauUUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 130089 0.68 0.998619
Target:  5'- uUCGAGcAGcgcCGGCGgacGACGGACCg -3'
miRNA:   3'- uGGCUU-UCuuaGCCGUau-UUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 121326 0.68 0.998619
Target:  5'- cCCGAG---GUCGGCAUccAGCGGugUg -3'
miRNA:   3'- uGGCUUucuUAGCCGUAu-UUGCCugG- -5'
3137 5' -47.2 NC_001493.1 + 5772 0.68 0.998619
Target:  5'- cCCGAG---GUCGGCAUccAGCGGugUg -3'
miRNA:   3'- uGGCUUucuUAGCCGUAu-UUGCCugG- -5'
3137 5' -47.2 NC_001493.1 + 31350 0.68 0.998619
Target:  5'- gGCCGAGAG-GUgGGCGcGGGCGGuugcagcguCCg -3'
miRNA:   3'- -UGGCUUUCuUAgCCGUaUUUGCCu--------GG- -5'
3137 5' -47.2 NC_001493.1 + 14535 0.68 0.998619
Target:  5'- uUCGAGcAGcgcCGGCGgacGACGGACCg -3'
miRNA:   3'- uGGCUU-UCuuaGCCGUau-UUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 47034 0.68 0.998536
Target:  5'- uGCgGAGGGAGUCgaGGCcGUGAACaacauccggcacauGGACCu -3'
miRNA:   3'- -UGgCUUUCUUAG--CCG-UAUUUG--------------CCUGG- -5'
3137 5' -47.2 NC_001493.1 + 32786 0.68 0.998327
Target:  5'- gACCG---GGAUCGGCAcgcGCGGAUa -3'
miRNA:   3'- -UGGCuuuCUUAGCCGUauuUGCCUGg -5'
3137 5' -47.2 NC_001493.1 + 12163 0.68 0.998327
Target:  5'- gUCGAGGGAggCGGgaAUAGAUgguGGACCg -3'
miRNA:   3'- uGGCUUUCUuaGCCg-UAUUUG---CCUGG- -5'
3137 5' -47.2 NC_001493.1 + 73550 0.68 0.99754
Target:  5'- gGCCGAucuguggGGGAAcgaCGGCAgucgGGACGGgaGCCu -3'
miRNA:   3'- -UGGCU-------UUCUUa--GCCGUa---UUUGCC--UGG- -5'
3137 5' -47.2 NC_001493.1 + 113256 0.68 0.997406
Target:  5'- cCCGAAAGAGaCGcGCGgucgcccagccACGGACCc -3'
miRNA:   3'- uGGCUUUCUUaGC-CGUauu--------UGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 57371 0.69 0.997169
Target:  5'- gGCCGAAaauGGGAUCGuGCGguucacaccgucCGGGCCc -3'
miRNA:   3'- -UGGCUU---UCUUAGC-CGUauuu--------GCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.