miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31370 3' -61.9 NC_006623.1 + 148517 0.66 0.660993
Target:  5'- -uACGUGGCGGgAaaGCCCUGGCc-- -3'
miRNA:   3'- ccUGUACCGCCgUagCGGGGCCGcgg -5'
31370 3' -61.9 NC_006623.1 + 124354 0.67 0.612163
Target:  5'- cGACGUuaGCGGCGacgcUCGCCgcgUCGGCgGCCg -3'
miRNA:   3'- cCUGUAc-CGCCGU----AGCGG---GGCCG-CGG- -5'
31370 3' -61.9 NC_006623.1 + 115052 0.67 0.602411
Target:  5'- cGGAgGUGgaaaGCGGCGcgGCCgCCaGCGCCu -3'
miRNA:   3'- -CCUgUAC----CGCCGUagCGG-GGcCGCGG- -5'
31370 3' -61.9 NC_006623.1 + 146560 0.67 0.602411
Target:  5'- cGGAgGUGgaaaGCGGCGcgGCCgCCaGCGCCu -3'
miRNA:   3'- -CCUgUAC----CGCCGUagCGG-GGcCGCGG- -5'
31370 3' -61.9 NC_006623.1 + 144705 0.67 0.586852
Target:  5'- cGGCAUGGCGGC-UC-CCacguaaagacuguuuUgGGCGCCc -3'
miRNA:   3'- cCUGUACCGCCGuAGcGG---------------GgCCGCGG- -5'
31370 3' -61.9 NC_006623.1 + 129653 0.69 0.478595
Target:  5'- cGGAC---GCGGCGUUGCCgaCCGGCagauucuGCCg -3'
miRNA:   3'- -CCUGuacCGCCGUAGCGG--GGCCG-------CGG- -5'
31370 3' -61.9 NC_006623.1 + 138714 0.7 0.426929
Target:  5'- gGGAgAguuGCGGCAgcCGCgCCGGCGCg -3'
miRNA:   3'- -CCUgUac-CGCCGUa-GCGgGGCCGCGg -5'
31370 3' -61.9 NC_006623.1 + 41429 0.7 0.418502
Target:  5'- uGuCGUGGCugGGCAagccUCGCaacaCUGGCGCCa -3'
miRNA:   3'- cCuGUACCG--CCGU----AGCGg---GGCCGCGG- -5'
31370 3' -61.9 NC_006623.1 + 113095 0.7 0.418502
Target:  5'- -uACGUGGCGGgAaaGCCCUGGCcCCc -3'
miRNA:   3'- ccUGUACCGCCgUagCGGGGCCGcGG- -5'
31370 3' -61.9 NC_006623.1 + 11016 0.71 0.377932
Target:  5'- -cACAUGGCGGUAUUGUauuggaaUUGGUGCCa -3'
miRNA:   3'- ccUGUACCGCCGUAGCGg------GGCCGCGG- -5'
31370 3' -61.9 NC_006623.1 + 67857 0.71 0.362461
Target:  5'- aGAUccGGUGGCGagGCCCUcGCGCCc -3'
miRNA:   3'- cCUGuaCCGCCGUagCGGGGcCGCGG- -5'
31370 3' -61.9 NC_006623.1 + 114872 0.76 0.188052
Target:  5'- aGGCGcUGGCGGCcgCGCCgcuuuccaccuCCGGCGCg -3'
miRNA:   3'- cCUGU-ACCGCCGuaGCGG-----------GGCCGCGg -5'
31370 3' -61.9 NC_006623.1 + 146739 0.76 0.188052
Target:  5'- aGGCGcUGGCGGCcgCGCCgcuuuccaccuCCGGCGCg -3'
miRNA:   3'- cCUGU-ACCGCCGuaGCGG-----------GGCCGCGg -5'
31370 3' -61.9 NC_006623.1 + 122895 0.78 0.15127
Target:  5'- aGAguUGGCGGCAgcCGCgCCGGCGCg -3'
miRNA:   3'- cCUguACCGCCGUa-GCGgGGCCGCGg -5'
31370 3' -61.9 NC_006623.1 + 134599 0.78 0.140538
Target:  5'- cGGGCGUcGGgGuuGUCGCCUCGGCGCUg -3'
miRNA:   3'- -CCUGUA-CCgCcgUAGCGGGGCCGCGG- -5'
31370 3' -61.9 NC_006623.1 + 124178 0.79 0.123884
Target:  5'- cGACGcGGCGaGCGUCGCCgcuaacgUCGGCGCCg -3'
miRNA:   3'- cCUGUaCCGC-CGUAGCGG-------GGCCGCGG- -5'
31370 3' -61.9 NC_006623.1 + 115048 1.12 0.000572
Target:  5'- cGGACAUGGCGGCAUCGCCCCGGCGCCc -3'
miRNA:   3'- -CCUGUACCGCCGUAGCGGGGCCGCGG- -5'
31370 3' -61.9 NC_006623.1 + 146564 1.12 0.000572
Target:  5'- cGGACAUGGCGGCAUCGCCCCGGCGCCc -3'
miRNA:   3'- -CCUGUACCGCCGUAGCGGGGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.