miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31370 5' -51.6 NC_006623.1 + 143596 0.66 0.990947
Target:  5'- gUGGGUCGaa-ACGGAcggUAC-AGACGGg -3'
miRNA:   3'- gACCCGGUacaUGCCU---AUGuUCUGCC- -5'
31370 5' -51.6 NC_006623.1 + 118016 0.66 0.990947
Target:  5'- gUGGGUCGaa-ACGGAcggUAC-AGACGGg -3'
miRNA:   3'- gACCCGGUacaUGCCU---AUGuUCUGCC- -5'
31370 5' -51.6 NC_006623.1 + 122079 0.66 0.986693
Target:  5'- gCUGGGCCGaGUuggacggcuACGGAuUGCGccGGGCGu -3'
miRNA:   3'- -GACCCGGUaCA---------UGCCU-AUGU--UCUGCc -5'
31370 5' -51.6 NC_006623.1 + 139533 0.66 0.986693
Target:  5'- gCUGGGCCGaGUuggacggcuACGGAuUGCGccGGGCGu -3'
miRNA:   3'- -GACCCGGUaCA---------UGCCU-AUGU--UCUGCc -5'
31370 5' -51.6 NC_006623.1 + 1516 0.66 0.986693
Target:  5'- -cGGGaCAgcaaagGUGCaGGAcgGCAGGACGGc -3'
miRNA:   3'- gaCCCgGUa-----CAUG-CCUa-UGUUCUGCC- -5'
31370 5' -51.6 NC_006623.1 + 110552 0.67 0.981047
Target:  5'- -aGGGUuggCAUGgAgGGggACAGGGCGGg -3'
miRNA:   3'- gaCCCG---GUACaUgCCuaUGUUCUGCC- -5'
31370 5' -51.6 NC_006623.1 + 128615 0.67 0.978815
Target:  5'- aUGGGCUAgcgGUcaGCGGGUACAcuuuauagGGAUGc -3'
miRNA:   3'- gACCCGGUa--CA--UGCCUAUGU--------UCUGCc -5'
31370 5' -51.6 NC_006623.1 + 6974 0.67 0.97563
Target:  5'- aCUGGGUCucgguggaacuacuGUGUggGCGGAUcgauGCAGauGACGGg -3'
miRNA:   3'- -GACCCGG--------------UACA--UGCCUA----UGUU--CUGCC- -5'
31370 5' -51.6 NC_006623.1 + 1130 0.68 0.970954
Target:  5'- -gGGGCgAg--AgGGAUugGAGGCGGu -3'
miRNA:   3'- gaCCCGgUacaUgCCUAugUUCUGCC- -5'
31370 5' -51.6 NC_006623.1 + 53551 0.69 0.953544
Target:  5'- -aGGGCgaguGUGUAUGGuauUAAGACGGa -3'
miRNA:   3'- gaCCCGg---UACAUGCCuauGUUCUGCC- -5'
31370 5' -51.6 NC_006623.1 + 145131 0.7 0.919104
Target:  5'- uCUGGGCCAgggGUugGCGGGagAUucuuGGGCGGc -3'
miRNA:   3'- -GACCCGGUa--CA--UGCCUa-UGu---UCUGCC- -5'
31370 5' -51.6 NC_006623.1 + 116481 0.7 0.919104
Target:  5'- uCUGGGCCAgggGUugGCGGGagAUucuuGGGCGGc -3'
miRNA:   3'- -GACCCGGUa--CA--UGCCUa-UGu---UCUGCC- -5'
31370 5' -51.6 NC_006623.1 + 28611 0.72 0.831648
Target:  5'- aUGGGgCGUGUACugggcguGGAUAUAAGACa- -3'
miRNA:   3'- gACCCgGUACAUG-------CCUAUGUUCUGcc -5'
31370 5' -51.6 NC_006623.1 + 115083 1.1 0.006711
Target:  5'- gCUGGGCCAUGUACGGAUACAAGACGGc -3'
miRNA:   3'- -GACCCGGUACAUGCCUAUGUUCUGCC- -5'
31370 5' -51.6 NC_006623.1 + 146529 1.1 0.006711
Target:  5'- gCUGGGCCAUGUACGGAUACAAGACGGc -3'
miRNA:   3'- -GACCCGGUACAUGCCUAUGUUCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.