miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31373 5' -53.1 NC_006623.1 + 136283 0.66 0.972339
Target:  5'- cGGGA-CCUUcgagGGCAUgUGCGuuucgacuACUACGCg -3'
miRNA:   3'- -CCCUaGGGA----UCGUAgAUGC--------UGGUGCG- -5'
31373 5' -53.1 NC_006623.1 + 123704 0.66 0.969443
Target:  5'- cGGuccacagUCCUAccGCcgCUGCGACgGCGCg -3'
miRNA:   3'- cCCua-----GGGAU--CGuaGAUGCUGgUGCG- -5'
31373 5' -53.1 NC_006623.1 + 137908 0.66 0.969443
Target:  5'- cGGuccacagUCCUAccGCcgCUGCGACgGCGCg -3'
miRNA:   3'- cCCua-----GGGAU--CGuaGAUGCUGgUGCG- -5'
31373 5' -53.1 NC_006623.1 + 12164 0.67 0.966336
Target:  5'- cGGGAUUCUgaccucAGCGUgaACGGCCAUccaggGCg -3'
miRNA:   3'- -CCCUAGGGa-----UCGUAgaUGCUGGUG-----CG- -5'
31373 5' -53.1 NC_006623.1 + 145745 0.67 0.964369
Target:  5'- uGGGUCCCUcGCAaaagcagguagccaaUCUGCGGguCCGguCGCg -3'
miRNA:   3'- cCCUAGGGAuCGU---------------AGAUGCU--GGU--GCG- -5'
31373 5' -53.1 NC_006623.1 + 23368 0.67 0.964369
Target:  5'- aGGGAUCCC-AGUGUCgauauaauccaACCAUGCc -3'
miRNA:   3'- -CCCUAGGGaUCGUAGaugc-------UGGUGCG- -5'
31373 5' -53.1 NC_006623.1 + 115866 0.67 0.964369
Target:  5'- uGGGUCCCUcGCAaaagcagguagccaaUCUGCGGguCCGguCGCg -3'
miRNA:   3'- cCCUAGGGAuCGU---------------AGAUGCU--GGU--GCG- -5'
31373 5' -53.1 NC_006623.1 + 83433 0.67 0.963013
Target:  5'- uGGAUCCUc-GCAg-UugGugCACGCg -3'
miRNA:   3'- cCCUAGGGauCGUagAugCugGUGCG- -5'
31373 5' -53.1 NC_006623.1 + 144911 0.67 0.963013
Target:  5'- cGGGAgUCCUGGCGgcgGCGACgGaGCa -3'
miRNA:   3'- -CCCUaGGGAUCGUagaUGCUGgUgCG- -5'
31373 5' -53.1 NC_006623.1 + 116701 0.67 0.963013
Target:  5'- cGGGAgUCCUGGCGgcgGCGACgGaGCa -3'
miRNA:   3'- -CCCUaGGGAUCGUagaUGCUGgUgCG- -5'
31373 5' -53.1 NC_006623.1 + 117364 0.67 0.959102
Target:  5'- uGGAUCCUacggcGGCGUCUGCuucugggGACCACc- -3'
miRNA:   3'- cCCUAGGGa----UCGUAGAUG-------CUGGUGcg -5'
31373 5' -53.1 NC_006623.1 + 144248 0.67 0.959102
Target:  5'- uGGAUCCUacggcGGCGUCUGCuucugggGACCACc- -3'
miRNA:   3'- cCCUAGGGa----UCGUAGAUG-------CUGGUGcg -5'
31373 5' -53.1 NC_006623.1 + 128971 0.67 0.951281
Target:  5'- uGGAUCCCUGGUgcuguacccagggAUgUACGAugccggcauCUACGCc -3'
miRNA:   3'- cCCUAGGGAUCG-------------UAgAUGCU---------GGUGCG- -5'
31373 5' -53.1 NC_006623.1 + 114857 0.67 0.947456
Target:  5'- -cGGUCCCgaaucgggaGGCG-CUgGCGGCCGCGCc -3'
miRNA:   3'- ccCUAGGGa--------UCGUaGA-UGCUGGUGCG- -5'
31373 5' -53.1 NC_006623.1 + 146754 0.67 0.947456
Target:  5'- -cGGUCCCgaaucgggaGGCG-CUgGCGGCCGCGCc -3'
miRNA:   3'- ccCUAGGGa--------UCGUaGA-UGCUGGUGCG- -5'
31373 5' -53.1 NC_006623.1 + 131165 0.68 0.942978
Target:  5'- -cGGUUCCUGaC-UCUGgGACCGCGCg -3'
miRNA:   3'- ccCUAGGGAUcGuAGAUgCUGGUGCG- -5'
31373 5' -53.1 NC_006623.1 + 3894 0.69 0.904196
Target:  5'- aGGGGcgccgcucagUCCCUgcaagucucuaaaGGCAUCaAUGAUCugGCa -3'
miRNA:   3'- -CCCU----------AGGGA-------------UCGUAGaUGCUGGugCG- -5'
31373 5' -53.1 NC_006623.1 + 110711 0.75 0.605069
Target:  5'- gGGGGUCCCcAGCAUCU-CGGaCAgGCa -3'
miRNA:   3'- -CCCUAGGGaUCGUAGAuGCUgGUgCG- -5'
31373 5' -53.1 NC_006623.1 + 79599 0.76 0.543731
Target:  5'- cGGGAUCCCgcauaacAGuCAUC-AUGAUCGCGCa -3'
miRNA:   3'- -CCCUAGGGa------UC-GUAGaUGCUGGUGCG- -5'
31373 5' -53.1 NC_006623.1 + 87278 0.81 0.307165
Target:  5'- cGGGUCCCUAGCGUUuuUACGAgaGCGCu -3'
miRNA:   3'- cCCUAGGGAUCGUAG--AUGCUggUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.