miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31374 5' -61.7 NC_006623.1 + 145935 0.66 0.6794
Target:  5'- gUCCGCagaGGGCCGCguagGCgu-ACgCGCg -3'
miRNA:   3'- aGGGCGg--CCUGGCGa---CGaguUGgGCG- -5'
31374 5' -61.7 NC_006623.1 + 135314 0.66 0.6794
Target:  5'- gCCCGCgGGACCcCUGuCUgcaAACCUGg -3'
miRNA:   3'- aGGGCGgCCUGGcGAC-GAg--UUGGGCg -5'
31374 5' -61.7 NC_006623.1 + 115677 0.66 0.6794
Target:  5'- gUCCGCagaGGGCCGCguagGCgu-ACgCGCg -3'
miRNA:   3'- aGGGCGg--CCUGGCGa---CGaguUGgGCG- -5'
31374 5' -61.7 NC_006623.1 + 73177 0.66 0.678427
Target:  5'- gCCCGCauuAUCGCUGUUCAuggggacaaagauGCCUGCc -3'
miRNA:   3'- aGGGCGgccUGGCGACGAGU-------------UGGGCG- -5'
31374 5' -61.7 NC_006623.1 + 140094 0.66 0.673557
Target:  5'- cCCCGCguccgugcguuauugCGGugCGCgGC---ACCCGCa -3'
miRNA:   3'- aGGGCG---------------GCCugGCGaCGaguUGGGCG- -5'
31374 5' -61.7 NC_006623.1 + 121518 0.66 0.673557
Target:  5'- cCCCGCguccgugcguuauugCGGugCGCgGC---ACCCGCa -3'
miRNA:   3'- aGGGCG---------------GCCugGCGaCGaguUGGGCG- -5'
31374 5' -61.7 NC_006623.1 + 66728 0.66 0.667702
Target:  5'- gCCgCGCCGG-CCGCaGCUacaaaacucaaaGACaCCGCu -3'
miRNA:   3'- aGG-GCGGCCuGGCGaCGAg-----------UUG-GGCG- -5'
31374 5' -61.7 NC_006623.1 + 1693 0.66 0.659881
Target:  5'- gUCCUGCCGucCUGCaccuuUGCUgu-CCCGCa -3'
miRNA:   3'- -AGGGCGGCcuGGCG-----ACGAguuGGGCG- -5'
31374 5' -61.7 NC_006623.1 + 122566 0.66 0.654007
Target:  5'- cUCCUggcgGCCGGGCacugguGCUGCUuguggcacccucggcCGugCCGCg -3'
miRNA:   3'- -AGGG----CGGCCUGg-----CGACGA---------------GUugGGCG- -5'
31374 5' -61.7 NC_006623.1 + 139046 0.66 0.654007
Target:  5'- cUCCUggcgGCCGGGCacugguGCUGCUuguggcacccucggcCGugCCGCg -3'
miRNA:   3'- -AGGG----CGGCCUGg-----CGACGA---------------GUugGGCG- -5'
31374 5' -61.7 NC_006623.1 + 6190 0.66 0.640279
Target:  5'- -gCUGCCGGA-CGCUGCUUugcuuCuuGCu -3'
miRNA:   3'- agGGCGGCCUgGCGACGAGuu---GggCG- -5'
31374 5' -61.7 NC_006623.1 + 2211 0.66 0.640279
Target:  5'- cCCUGCUccaaaGGcACCGUUGUggAGCCUGCg -3'
miRNA:   3'- aGGGCGG-----CC-UGGCGACGagUUGGGCG- -5'
31374 5' -61.7 NC_006623.1 + 140082 0.67 0.591293
Target:  5'- cUCCGacuCCGGGUCGCUccaGCUCcuCCCGCg -3'
miRNA:   3'- aGGGC---GGCCUGGCGA---CGAGuuGGGCG- -5'
31374 5' -61.7 NC_006623.1 + 121530 0.67 0.591293
Target:  5'- cUCCGacuCCGGGUCGCUccaGCUCcuCCCGCg -3'
miRNA:   3'- aGGGC---GGCCUGGCGA---CGAGuuGGGCG- -5'
31374 5' -61.7 NC_006623.1 + 109185 0.68 0.552553
Target:  5'- aUUCCGCCGGGauGgUG-UCGAUCCGCc -3'
miRNA:   3'- -AGGGCGGCCUggCgACgAGUUGGGCG- -5'
31374 5' -61.7 NC_006623.1 + 113201 0.68 0.542979
Target:  5'- uUCUCGuuGGACCauGCUGacauGCCUGCa -3'
miRNA:   3'- -AGGGCggCCUGG--CGACgaguUGGGCG- -5'
31374 5' -61.7 NC_006623.1 + 148411 0.68 0.542979
Target:  5'- uUCUCGuuGGACCauGCUGacauGCCUGCa -3'
miRNA:   3'- -AGGGCggCCUGG--CGACgaguUGGGCG- -5'
31374 5' -61.7 NC_006623.1 + 51265 0.68 0.524004
Target:  5'- -aCCGuuGGACCugguggauGCUGCUCAcUuuGCu -3'
miRNA:   3'- agGGCggCCUGG--------CGACGAGUuGggCG- -5'
31374 5' -61.7 NC_006623.1 + 47238 0.7 0.408326
Target:  5'- cUCCGCCGGuACUggaGCUGCUCGuguaGCCC-Cg -3'
miRNA:   3'- aGGGCGGCC-UGG---CGACGAGU----UGGGcG- -5'
31374 5' -61.7 NC_006623.1 + 12204 0.7 0.408326
Target:  5'- cUUuuGuCCGGGCCGUUGCUgAuCUCGCu -3'
miRNA:   3'- -AGggC-GGCCUGGCGACGAgUuGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.