Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31376 | 3' | -61 | NC_006623.1 | + | 122410 | 0.67 | 0.617334 |
Target: 5'- uGgCUCGACuCUCUGgACGGUGACcGCu- -3' miRNA: 3'- -CgGAGCUG-GGGACgUGCCGCUG-CGuu -5' |
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31376 | 3' | -61 | NC_006623.1 | + | 139202 | 0.67 | 0.617334 |
Target: 5'- uGgCUCGACuCUCUGgACGGUGACcGCu- -3' miRNA: 3'- -CgGAGCUG-GGGACgUGCCGCUG-CGuu -5' |
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31376 | 3' | -61 | NC_006623.1 | + | 121570 | 0.67 | 0.607378 |
Target: 5'- gGCUUCGGCCgCCaGgGCGGguaGGCGCAc -3' miRNA: 3'- -CGGAGCUGG-GGaCgUGCCg--CUGCGUu -5' |
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31376 | 3' | -61 | NC_006623.1 | + | 140042 | 0.67 | 0.607378 |
Target: 5'- gGCUUCGGCCgCCaGgGCGGguaGGCGCAc -3' miRNA: 3'- -CGGAGCUGG-GGaCgUGCCg--CUGCGUu -5' |
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31376 | 3' | -61 | NC_006623.1 | + | 107 | 0.68 | 0.571732 |
Target: 5'- cGCCUCGAaauggcgcguuuggcCCCCUGCcagcGCGGCccugcguucguGCGCAGc -3' miRNA: 3'- -CGGAGCU---------------GGGGACG----UGCCGc----------UGCGUU- -5' |
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31376 | 3' | -61 | NC_006623.1 | + | 101679 | 0.69 | 0.500384 |
Target: 5'- -gCUUGACCCUacccgUGUugGGUGugGCGGa -3' miRNA: 3'- cgGAGCUGGGG-----ACGugCCGCugCGUU- -5' |
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31376 | 3' | -61 | NC_006623.1 | + | 122759 | 0.69 | 0.472566 |
Target: 5'- cGCCUCGAUCUUUGCGaGG-GACGCu- -3' miRNA: 3'- -CGGAGCUGGGGACGUgCCgCUGCGuu -5' |
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31376 | 3' | -61 | NC_006623.1 | + | 138852 | 0.69 | 0.472566 |
Target: 5'- cGCCUCGAUCUUUGCGaGG-GACGCu- -3' miRNA: 3'- -CGGAGCUGGGGACGUgCCgCUGCGuu -5' |
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31376 | 3' | -61 | NC_006623.1 | + | 40370 | 0.71 | 0.378007 |
Target: 5'- cGCCgugCGGCgaCCUGCGgcuUGGCGACGCu- -3' miRNA: 3'- -CGGa--GCUGg-GGACGU---GCCGCUGCGuu -5' |
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31376 | 3' | -61 | NC_006623.1 | + | 121675 | 1.07 | 0.001222 |
Target: 5'- gGCCUCGACCCCUGCACGGCGACGCAAg -3' miRNA: 3'- -CGGAGCUGGGGACGUGCCGCUGCGUU- -5' |
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31376 | 3' | -61 | NC_006623.1 | + | 139937 | 1.07 | 0.001222 |
Target: 5'- gGCCUCGACCCCUGCACGGCGACGCAAg -3' miRNA: 3'- -CGGAGCUGGGGACGUGCCGCUGCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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