Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31377 | 5' | -45.5 | NC_006623.1 | + | 1859 | 0.69 | 0.999766 |
Target: 5'- gCUGGAUGGAc--CAUcCUCGACuGGGc -3' miRNA: 3'- gGAUUUACCUuuuGUAcGAGCUG-CCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 8230 | 0.67 | 0.999982 |
Target: 5'- gCUGAGUGGc--ACuUGUccCGACGGGa -3' miRNA: 3'- gGAUUUACCuuuUGuACGa-GCUGCCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 15484 | 0.7 | 0.998882 |
Target: 5'- uCCUAGcuguugGUGGAGGA-AUGCUUGugGGu -3' miRNA: 3'- -GGAUU------UACCUUUUgUACGAGCugCCc -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 28822 | 0.66 | 0.999991 |
Target: 5'- ------cGGAAAuCGUGCgUGGCGGGc -3' miRNA: 3'- ggauuuaCCUUUuGUACGaGCUGCCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 31594 | 0.67 | 0.99998 |
Target: 5'- gUCUGua-GGucauuccaGUGCUCGGCGGGc -3' miRNA: 3'- -GGAUuuaCCuuuug---UACGAGCUGCCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 35480 | 0.66 | 0.999993 |
Target: 5'- uCCguagAAGUGGA--AUA-GCUCG-CGGGu -3' miRNA: 3'- -GGa---UUUACCUuuUGUaCGAGCuGCCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 48526 | 0.7 | 0.998638 |
Target: 5'- -aUGGAUaugGGAAAGCAaaCUCGugGGGg -3' miRNA: 3'- ggAUUUA---CCUUUUGUacGAGCugCCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 55901 | 0.77 | 0.926857 |
Target: 5'- cCCUGucGAUGGcaaaaaguaacgacGGAGCAUGCUUGAgGGGu -3' miRNA: 3'- -GGAU--UUACC--------------UUUUGUACGAGCUgCCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 60035 | 0.68 | 0.999911 |
Target: 5'- gCUAGAaaugaugauuuuauUGGAAAGCAUGU---ACGGGa -3' miRNA: 3'- gGAUUU--------------ACCUUUUGUACGagcUGCCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 60371 | 0.68 | 0.999892 |
Target: 5'- gCUGAAUuaGAAAACGaGCUCGA-GGGa -3' miRNA: 3'- gGAUUUAc-CUUUUGUaCGAGCUgCCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 80024 | 0.69 | 0.999766 |
Target: 5'- gCUAAGUGGcGAGuCA--CUUGACGGGa -3' miRNA: 3'- gGAUUUACCuUUU-GUacGAGCUGCCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 83386 | 0.74 | 0.987246 |
Target: 5'- ---cAGUGGGAGACAaaauguauaaUGCgCGGCGGGg -3' miRNA: 3'- ggauUUACCUUUUGU----------ACGaGCUGCCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 107666 | 0.73 | 0.99149 |
Target: 5'- aUUGGAcGGAAGuCAUGCUCGGaGGGg -3' miRNA: 3'- gGAUUUaCCUUUuGUACGAGCUgCCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 115187 | 0.7 | 0.999261 |
Target: 5'- aCgUGAGUgaGGAAGGgGUGCUUaACGGGa -3' miRNA: 3'- -GgAUUUA--CCUUUUgUACGAGcUGCCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 121010 | 0.73 | 0.988661 |
Target: 5'- cCCUGAAUgugaucgGGAAGugAUaUUCGGCGGGa -3' miRNA: 3'- -GGAUUUA-------CCUUUugUAcGAGCUGCCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 121975 | 1.15 | 0.017166 |
Target: 5'- cCCUAAAUGGAAAACAUGCUCGACGGGu -3' miRNA: 3'- -GGAUUUACCUUUUGUACGAGCUGCCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 124677 | 0.66 | 0.999997 |
Target: 5'- uCCUGGGaagGGAAAACA-GCUCccCGGa -3' miRNA: 3'- -GGAUUUa--CCUUUUGUaCGAGcuGCCc -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 132748 | 0.73 | 0.990222 |
Target: 5'- uUCUAAcGUGGAcGACAUGauaUCGGCGGc -3' miRNA: 3'- -GGAUU-UACCUuUUGUACg--AGCUGCCc -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 133663 | 0.66 | 0.999991 |
Target: 5'- uCCgaguuUGGAucauCGUGCUCGGuguccuCGGGg -3' miRNA: 3'- -GGauuu-ACCUuuu-GUACGAGCU------GCCC- -5' |
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31377 | 5' | -45.5 | NC_006623.1 | + | 139637 | 1.15 | 0.017166 |
Target: 5'- cCCUAAAUGGAAAACAUGCUCGACGGGu -3' miRNA: 3'- -GGAUUUACCUUUUGUACGAGCUGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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