miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31378 3' -56.2 NC_006623.1 + 130968 0.66 0.885362
Target:  5'- aGAgUCCGAguaccgagucggaaaCcGCGCGGUCCcAgAGUCa -3'
miRNA:   3'- aUUgAGGCU---------------GuCGCGCCAGG-UgUCAG- -5'
31378 3' -56.2 NC_006623.1 + 110853 0.66 0.885362
Target:  5'- aAGCUCuguacgucccgucaaCGugAGUGUGGcuauaCCACAGUCa -3'
miRNA:   3'- aUUGAG---------------GCugUCGCGCCa----GGUGUCAG- -5'
31378 3' -56.2 NC_006623.1 + 138168 0.66 0.867989
Target:  5'- --uCUCCGGacGUGCGcGUCC-CAGUCg -3'
miRNA:   3'- auuGAGGCUguCGCGC-CAGGuGUCAG- -5'
31378 3' -56.2 NC_006623.1 + 123444 0.66 0.867989
Target:  5'- --uCUCCGGacGUGCGcGUCC-CAGUCg -3'
miRNA:   3'- auuGAGGCUguCGCGC-CAGGuGUCAG- -5'
31378 3' -56.2 NC_006623.1 + 112298 0.68 0.783319
Target:  5'- gGGCUCCGACuggaccucgaAGCGCGaucacagaaucGUCaCGCAGUUc -3'
miRNA:   3'- aUUGAGGCUG----------UCGCGC-----------CAG-GUGUCAG- -5'
31378 3' -56.2 NC_006623.1 + 123723 0.68 0.77395
Target:  5'- -cGCUgCGACGGCGCGcuuagCCGCGGg- -3'
miRNA:   3'- auUGAgGCUGUCGCGCca---GGUGUCag -5'
31378 3' -56.2 NC_006623.1 + 137889 0.68 0.77395
Target:  5'- -cGCUgCGACGGCGCGcuuagCCGCGGg- -3'
miRNA:   3'- auUGAgGCUGUCGCGCca---GGUGUCag -5'
31378 3' -56.2 NC_006623.1 + 104522 0.69 0.725361
Target:  5'- aGAUUUgCGGgAGCGauGUCCACGGUCa -3'
miRNA:   3'- aUUGAG-GCUgUCGCgcCAGGUGUCAG- -5'
31378 3' -56.2 NC_006623.1 + 130430 0.7 0.684961
Target:  5'- gGACUCCGGCAGCGUccucGcGUUUACGGcCu -3'
miRNA:   3'- aUUGAGGCUGUCGCG----C-CAGGUGUCaG- -5'
31378 3' -56.2 NC_006623.1 + 6351 0.7 0.674726
Target:  5'- cAGCgUCCGGCAGCGCGG-CCAa---- -3'
miRNA:   3'- aUUG-AGGCUGUCGCGCCaGGUgucag -5'
31378 3' -56.2 NC_006623.1 + 126357 0.72 0.57183
Target:  5'- cGAC-CCGAaauccguGCGCGGgugCCACGGUCc -3'
miRNA:   3'- aUUGaGGCUgu-----CGCGCCa--GGUGUCAG- -5'
31378 3' -56.2 NC_006623.1 + 123689 1.07 0.003456
Target:  5'- cUAACUCCGACAGCGCGGUCCACAGUCc -3'
miRNA:   3'- -AUUGAGGCUGUCGCGCCAGGUGUCAG- -5'
31378 3' -56.2 NC_006623.1 + 137923 1.07 0.003456
Target:  5'- cUAACUCCGACAGCGCGGUCCACAGUCc -3'
miRNA:   3'- -AUUGAGGCUGUCGCGCCAGGUGUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.