Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31378 | 5' | -61.8 | NC_006623.1 | + | 110973 | 0.68 | 0.567743 |
Target: 5'- uGUGAgGGUGCGaccugUAGCUcCGGaGCGCu -3' miRNA: 3'- -CGCUgCCGCGCga---AUCGGcGCC-CGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 139618 | 0.68 | 0.567743 |
Target: 5'- uCGACGG-GUGCUac-CCGCuGGCGCu -3' miRNA: 3'- cGCUGCCgCGCGAaucGGCGcCCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 121994 | 0.68 | 0.567743 |
Target: 5'- uCGACGG-GUGCUac-CCGCuGGCGCu -3' miRNA: 3'- cGCUGCCgCGCGAaucGGCGcCCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 129943 | 0.68 | 0.566778 |
Target: 5'- aGCuGACGGCGC-CUUcaGGCgGCGGauaugucGCGUg -3' miRNA: 3'- -CG-CUGCCGCGcGAA--UCGgCGCC-------CGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 124359 | 0.68 | 0.558112 |
Target: 5'- gGCGccgacguuaGCGGCGaCGCUc-GCCGCGucGGCGg -3' miRNA: 3'- -CGC---------UGCCGC-GCGAauCGGCGC--CCGCg -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 110373 | 0.68 | 0.533306 |
Target: 5'- cCGACGGaccCGCGCguauuuuuaauucgUGuCCGCaGGGCGCg -3' miRNA: 3'- cGCUGCC---GCGCGa-------------AUcGGCG-CCCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 139335 | 0.68 | 0.52011 |
Target: 5'- gGCGACGcGCGgccuagGUUUgaGGCCGCGGuGgGCg -3' miRNA: 3'- -CGCUGC-CGCg-----CGAA--UCGGCGCC-CgCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 111 | 0.68 | 0.52011 |
Target: 5'- uCGAaaUGGCGCGUUUGGCCcccugccagcGCGGcccugcguucguGCGCa -3' miRNA: 3'- cGCU--GCCGCGCGAAUCGG----------CGCC------------CGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 122277 | 0.68 | 0.52011 |
Target: 5'- gGCGACGcGCGgccuagGUUUgaGGCCGCGGuGgGCg -3' miRNA: 3'- -CGCUGC-CGCg-----CGAA--UCGGCGCC-CgCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 123465 | 0.69 | 0.510765 |
Target: 5'- gGCGGcCGGCGCGCUgcucUGGUuauuccagugCGCGGacCGCg -3' miRNA: 3'- -CGCU-GCCGCGCGA----AUCG----------GCGCCc-GCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 138147 | 0.69 | 0.510765 |
Target: 5'- gGCGGcCGGCGCGCUgcucUGGUuauuccagugCGCGGacCGCg -3' miRNA: 3'- -CGCU-GCCGCGCGA----AUCG----------GCGCCc-GCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 45831 | 0.69 | 0.501489 |
Target: 5'- uCGA-GGCGCGCUc-GCCGgGcuccGGCGCa -3' miRNA: 3'- cGCUgCCGCGCGAauCGGCgC----CCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 124181 | 0.69 | 0.484075 |
Target: 5'- cGCGGCGaGCGuCGCcgcuaacgucggcGCCGCGGGgaGCg -3' miRNA: 3'- -CGCUGC-CGC-GCGaau----------CGGCGCCCg-CG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 146227 | 0.7 | 0.456306 |
Target: 5'- uGCGACGGgGgGC-UAGUC-CGGGCa- -3' miRNA: 3'- -CGCUGCCgCgCGaAUCGGcGCCCGcg -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 115385 | 0.7 | 0.456306 |
Target: 5'- uGCGACGGgGgGC-UAGUC-CGGGCa- -3' miRNA: 3'- -CGCUGCCgCgCGaAUCGGcGCCCGcg -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 114814 | 0.7 | 0.421787 |
Target: 5'- ---cCGGaUGCGCcagGGgCGCGGGCGCg -3' miRNA: 3'- cgcuGCC-GCGCGaa-UCgGCGCCCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 146797 | 0.7 | 0.421787 |
Target: 5'- ---cCGGaUGCGCcagGGgCGCGGGCGCg -3' miRNA: 3'- cgcuGCC-GCGCGaa-UCgGCGCCCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 128486 | 0.72 | 0.342802 |
Target: 5'- cGCGgaaACGGCGC-CUgcGCCcgguaCGGGCGCg -3' miRNA: 3'- -CGC---UGCCGCGcGAauCGGc----GCCCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 122880 | 0.72 | 0.32834 |
Target: 5'- cGCGcCGGCGCGCaaGGCggccagguauuCGCGacGGCGCa -3' miRNA: 3'- -CGCuGCCGCGCGaaUCG-----------GCGC--CCGCG- -5' |
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31378 | 5' | -61.8 | NC_006623.1 | + | 138731 | 0.72 | 0.32834 |
Target: 5'- cGCGcCGGCGCGCaaGGCggccagguauuCGCGacGGCGCa -3' miRNA: 3'- -CGCuGCCGCGCGaaUCG-----------GCGC--CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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