miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31379 3' -56.5 NC_006623.1 + 112062 0.66 0.89945
Target:  5'- uUCGAaaccccUCGCGCgCGGcacuGCAUGCGcUUCCg -3'
miRNA:   3'- uAGCU------AGCGCG-GCC----UGUAUGCcAGGG- -5'
31379 3' -56.5 NC_006623.1 + 25383 0.66 0.886279
Target:  5'- cUCGAUUGacauccuGCCGGAUGUGCcGcCCCa -3'
miRNA:   3'- uAGCUAGCg------CGGCCUGUAUGcCaGGG- -5'
31379 3' -56.5 NC_006623.1 + 146546 0.69 0.753235
Target:  5'- gAUCGugagCGCGCCGGAgGUggaaagcggcGCGGccgccagcgccUCCCg -3'
miRNA:   3'- -UAGCua--GCGCGGCCUgUA----------UGCC-----------AGGG- -5'
31379 3' -56.5 NC_006623.1 + 115066 0.69 0.753235
Target:  5'- gAUCGugagCGCGCCGGAgGUggaaagcggcGCGGccgccagcgccUCCCg -3'
miRNA:   3'- -UAGCua--GCGCGGCCUgUA----------UGCC-----------AGGG- -5'
31379 3' -56.5 NC_006623.1 + 138160 0.7 0.724279
Target:  5'- --aGAUCaUGucuCCGGACGUGCGcGUCCCa -3'
miRNA:   3'- uagCUAGcGC---GGCCUGUAUGC-CAGGG- -5'
31379 3' -56.5 NC_006623.1 + 123452 0.7 0.724279
Target:  5'- --aGAUCaUGucuCCGGACGUGCGcGUCCCa -3'
miRNA:   3'- uagCUAGcGC---GGCCUGUAUGC-CAGGG- -5'
31379 3' -56.5 NC_006623.1 + 8430 0.72 0.583645
Target:  5'- cUCGAUCGCuGCUGuucGACugcAUGGUCCCg -3'
miRNA:   3'- uAGCUAGCG-CGGC---CUGua-UGCCAGGG- -5'
31379 3' -56.5 NC_006623.1 + 122056 0.72 0.577624
Target:  5'- --gGAUUGCGCCGGGCGUgaaggggggggggcgGCGGgaugUCCg -3'
miRNA:   3'- uagCUAGCGCGGCCUGUA---------------UGCCa---GGG- -5'
31379 3' -56.5 NC_006623.1 + 139556 0.72 0.577624
Target:  5'- --gGAUUGCGCCGGGCGUgaaggggggggggcgGCGGgaugUCCg -3'
miRNA:   3'- uagCUAGCGCGGCCUGUA---------------UGCCa---GGG- -5'
31379 3' -56.5 NC_006623.1 + 126158 1.1 0.002285
Target:  5'- cAUCGAUCGCGCCGGACAUACGGUCCCg -3'
miRNA:   3'- -UAGCUAGCGCGGCCUGUAUGCCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.