miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
31380	5'	-55.3	NC_006623.1	+	5265	0.66	0.938739
	Target:  5'- aCCAGGGAU-UACGAUugcaGCaCGGCcuaAUCa -3' miRNA:   3'- gGGUCCCUAcAUGCUA----CG-GCCG---UAGa -5'
31380	5'	-55.3	NC_006623.1	+	10470	0.66	0.923347
	Target:  5'- aCCCAGGGGgacauCGAgGCC-GCAUCc -3' miRNA:   3'- -GGGUCCCUacau-GCUaCGGcCGUAGa -5'
31380	5'	-55.3	NC_006623.1	+	129185	0.66	0.917737
	Target:  5'- aCCCAcuGAgagcugGUAggcguaGAUGCCGGCAUCg -3' miRNA:   3'- -GGGUccCUa-----CAUg-----CUACGGCCGUAGa -5'
31380	5'	-55.3	NC_006623.1	+	148033	0.68	0.848917
	Target:  5'- aUCUGGGGcAUGcGCGcgGCCGGCcUCc -3' miRNA:   3'- -GGGUCCC-UACaUGCuaCGGCCGuAGa -5'
31380	5'	-55.3	NC_006623.1	+	113579	0.68	0.848917
	Target:  5'- aUCUGGGGcAUGcGCGcgGCCGGCcUCc -3' miRNA:   3'- -GGGUCCC-UACaUGCuaCGGCCGuAGa -5'
31380	5'	-55.3	NC_006623.1	+	81139	0.69	0.788758
	Target:  5'- gCUAuGGGAUGUGCGAcgGuuGGCAa-- -3' miRNA:   3'- gGGU-CCCUACAUGCUa-CggCCGUaga -5'
31380	5'	-55.3	NC_006623.1	+	131805	0.74	0.509378
	Target:  5'- gCCAGGGGUGUGCucuGUGCaguuucuGGCAUCg -3' miRNA:   3'- gGGUCCCUACAUGc--UACGg------CCGUAGa -5'
31380	5'	-55.3	NC_006623.1	+	128988	1.11	0.002689
	Target:  5'- aCCCAGGGAUGUACGAUGCCGGCAUCUa -3' miRNA:   3'- -GGGUCCCUACAUGCUACGGCCGUAGA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home