miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31381 3' -56.4 NC_006623.1 + 115421 0.66 0.891181
Target:  5'- cUCCGCC-CGGuagguauGCGCGGACccgAGCGgGAa -3'
miRNA:   3'- cAGGCGGaGUC-------UGCGCCUG---UUGCaCU- -5'
31381 3' -56.4 NC_006623.1 + 146191 0.66 0.891181
Target:  5'- cUCCGCC-CGGuagguauGCGCGGACccgAGCGgGAa -3'
miRNA:   3'- cAGGCGGaGUC-------UGCGCCUG---UUGCaCU- -5'
31381 3' -56.4 NC_006623.1 + 130042 0.67 0.848011
Target:  5'- uGUCCGCgUCuGAgGCGGACGucccGCGc-- -3'
miRNA:   3'- -CAGGCGgAGuCUgCGCCUGU----UGCacu -5'
31381 3' -56.4 NC_006623.1 + 129935 0.67 0.831785
Target:  5'- --gCGCCuUCAGGCgGCGGAUAugucGCGUGu -3'
miRNA:   3'- cagGCGG-AGUCUG-CGCCUGU----UGCACu -5'
31381 3' -56.4 NC_006623.1 + 114810 0.67 0.855837
Target:  5'- aUgCGCCagGGGCGCGGGC-GCGUcGGa -3'
miRNA:   3'- cAgGCGGagUCUGCGCCUGuUGCA-CU- -5'
31381 3' -56.4 NC_006623.1 + 146801 0.67 0.855837
Target:  5'- aUgCGCCagGGGCGCGGGC-GCGUcGGa -3'
miRNA:   3'- cAgGCGGagUCUGCGCCUGuUGCA-CU- -5'
31381 3' -56.4 NC_006623.1 + 116194 0.69 0.760338
Target:  5'- gGUUCuUCUCGGG-GCGGACAugGUGGa -3'
miRNA:   3'- -CAGGcGGAGUCUgCGCCUGUugCACU- -5'
31381 3' -56.4 NC_006623.1 + 84003 0.69 0.769755
Target:  5'- cUCCGCCcaaaCAGACcagGCGGugA-CGUGAu -3'
miRNA:   3'- cAGGCGGa---GUCUG---CGCCugUuGCACU- -5'
31381 3' -56.4 NC_006623.1 + 145418 0.69 0.760338
Target:  5'- gGUUCuUCUCGGG-GCGGACAugGUGGa -3'
miRNA:   3'- -CAGGcGGAGUCUgCGCCUGUugCACU- -5'
31381 3' -56.4 NC_006623.1 + 39603 0.71 0.620802
Target:  5'- -gCCGCaCUCGGAauugggauaGCGGugGugGUGAg -3'
miRNA:   3'- caGGCG-GAGUCUg--------CGCCugUugCACU- -5'
31381 3' -56.4 NC_006623.1 + 84706 0.73 0.510914
Target:  5'- -gCCGCaUCAGACGgGGGCAAUGUaGAu -3'
miRNA:   3'- caGGCGgAGUCUGCgCCUGUUGCA-CU- -5'
31381 3' -56.4 NC_006623.1 + 129874 1.09 0.002899
Target:  5'- cGUCCGCCUCAGACGCGGACAACGUGAc -3'
miRNA:   3'- -CAGGCGGAGUCUGCGCCUGUUGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.