miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31382 5' -56.1 NC_006623.1 + 46406 0.66 0.888394
Target:  5'- gAGACCuaGaAGcCGUGGCGCGcGGAGCg -3'
miRNA:   3'- -UCUGGggC-UC-GCGCCGUGUaCUUUGa -5'
31382 5' -56.1 NC_006623.1 + 6403 0.66 0.881435
Target:  5'- cGGGCUuaagaCGGaaccGCGCGGCACAaGGAGCa -3'
miRNA:   3'- -UCUGGg----GCU----CGCGCCGUGUaCUUUGa -5'
31382 5' -56.1 NC_006623.1 + 131549 0.66 0.874254
Target:  5'- cGGACUCUGGGCGCaGaGCcgGAAAUUa -3'
miRNA:   3'- -UCUGGGGCUCGCGcCgUGuaCUUUGA- -5'
31382 5' -56.1 NC_006623.1 + 131357 0.67 0.859239
Target:  5'- cGGACUCaGAGCGCGGgAacUGAGGCc -3'
miRNA:   3'- -UCUGGGgCUCGCGCCgUguACUUUGa -5'
31382 5' -56.1 NC_006623.1 + 131165 0.67 0.835179
Target:  5'- cAGACCCCGAGCaCGaUACccGAGAUa -3'
miRNA:   3'- -UCUGGGGCUCGcGCcGUGuaCUUUGa -5'
31382 5' -56.1 NC_006623.1 + 66288 0.67 0.826776
Target:  5'- uAGGCgCCCcAGCGCGGCugAU--AACa -3'
miRNA:   3'- -UCUG-GGGcUCGCGCCGugUAcuUUGa -5'
31382 5' -56.1 NC_006623.1 + 12260 0.7 0.714449
Target:  5'- cAGAUCCCGguucaucugGGCGCGGUACGUccAAACg -3'
miRNA:   3'- -UCUGGGGC---------UCGCGCCGUGUAc-UUUGa -5'
31382 5' -56.1 NC_006623.1 + 115063 0.7 0.704406
Target:  5'- -cGCCCCG-GCGCc-CACAUGggGCUg -3'
miRNA:   3'- ucUGGGGCuCGCGccGUGUACuuUGA- -5'
31382 5' -56.1 NC_006623.1 + 146549 0.7 0.704406
Target:  5'- -cGCCCCG-GCGCc-CACAUGggGCUg -3'
miRNA:   3'- ucUGGGGCuCGCGccGUGUACuuUGA- -5'
31382 5' -56.1 NC_006623.1 + 131453 0.71 0.63288
Target:  5'- cAGGCCCCGAGUaCGGUACcgaAAGCUa -3'
miRNA:   3'- -UCUGGGGCUCGcGCCGUGuacUUUGA- -5'
31382 5' -56.1 NC_006623.1 + 26347 0.74 0.482487
Target:  5'- aGGGCCCgGGGgGUGGUAUAUGAAGa- -3'
miRNA:   3'- -UCUGGGgCUCgCGCCGUGUACUUUga -5'
31382 5' -56.1 NC_006623.1 + 131294 0.75 0.418182
Target:  5'- cAGACCCCGAGCaCGGUACcgaAAACUa -3'
miRNA:   3'- -UCUGGGGCUCGcGCCGUGuacUUUGA- -5'
31382 5' -56.1 NC_006623.1 + 131230 0.8 0.203544
Target:  5'- -cGCUCCGAGCGCGGCGCcgGAggUUu -3'
miRNA:   3'- ucUGGGGCUCGCGCCGUGuaCUuuGA- -5'
31382 5' -56.1 NC_006623.1 + 131579 0.94 0.027549
Target:  5'- cAGACCCCGAGCGCGGCACcgGAggUUu -3'
miRNA:   3'- -UCUGGGGCUCGCGCCGUGuaCUuuGA- -5'
31382 5' -56.1 NC_006623.1 + 130904 1.08 0.002895
Target:  5'- gAGACCCCGAGCGCGGCACAUGAAACUa -3'
miRNA:   3'- -UCUGGGGCUCGCGCCGUGUACUUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.