miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31383 5' -57.2 NC_006623.1 + 137526 0.66 0.850057
Target:  5'- -gGCGGccuuuaGGGGCacggACCUGCCCGGa -3'
miRNA:   3'- caCGUCuuugg-CUCCG----UGGACGGGUC- -5'
31383 5' -57.2 NC_006623.1 + 1312 0.66 0.850057
Target:  5'- -gGCAGGGACCgcgGAGGUACaUGCCa-- -3'
miRNA:   3'- caCGUCUUUGG---CUCCGUGgACGGguc -5'
31383 5' -57.2 NC_006623.1 + 124086 0.66 0.850057
Target:  5'- -gGCGGccuuuaGGGGCacggACCUGCCCGGa -3'
miRNA:   3'- caCGUCuuugg-CUCCG----UGGACGGGUC- -5'
31383 5' -57.2 NC_006623.1 + 112364 0.66 0.8253
Target:  5'- -cGCGGcAGCgCGAGGUGCuUUGCUCAGu -3'
miRNA:   3'- caCGUCuUUG-GCUCCGUG-GACGGGUC- -5'
31383 5' -57.2 NC_006623.1 + 138847 0.66 0.824446
Target:  5'- -cGCGGcacGGCCGAGggugccacaagcaGCACCagUGCCCGGc -3'
miRNA:   3'- caCGUCu--UUGGCUC-------------CGUGG--ACGGGUC- -5'
31383 5' -57.2 NC_006623.1 + 122764 0.66 0.816682
Target:  5'- -cGCGGcacGGCCGAGggugccacaacaGCACCagUGCCCGGc -3'
miRNA:   3'- caCGUCu--UUGGCUC------------CGUGG--ACGGGUC- -5'
31383 5' -57.2 NC_006623.1 + 28808 0.67 0.777797
Target:  5'- -gGCGGGcgUCGAGGCACaugucuuauauccacGCCCAGu -3'
miRNA:   3'- caCGUCUuuGGCUCCGUGga-------------CGGGUC- -5'
31383 5' -57.2 NC_006623.1 + 87118 0.67 0.768378
Target:  5'- -cGCuAGGGAcCCGAGGCACUgaaaagauagcagaUGCUCGGu -3'
miRNA:   3'- caCG-UCUUU-GGCUCCGUGG--------------ACGGGUC- -5'
31383 5' -57.2 NC_006623.1 + 146385 0.68 0.712626
Target:  5'- aUGUGGgcGCCGGGGCgaugccGCCaUGUCCGGa -3'
miRNA:   3'- cACGUCuuUGGCUCCG------UGG-ACGGGUC- -5'
31383 5' -57.2 NC_006623.1 + 115227 0.68 0.712626
Target:  5'- aUGUGGgcGCCGGGGCgaugccGCCaUGUCCGGa -3'
miRNA:   3'- cACGUCuuUGGCUCCG------UGG-ACGGGUC- -5'
31383 5' -57.2 NC_006623.1 + 128486 0.68 0.702564
Target:  5'- -cGCGGAAAC---GGCGCCUgcGCCCGGu -3'
miRNA:   3'- caCGUCUUUGgcuCCGUGGA--CGGGUC- -5'
31383 5' -57.2 NC_006623.1 + 1657 0.69 0.640215
Target:  5'- aGUGCGGGAuuuUCG-GGCAucuagucUCUGCCCAGu -3'
miRNA:   3'- -CACGUCUUu--GGCuCCGU-------GGACGGGUC- -5'
31383 5' -57.2 NC_006623.1 + 4064 0.72 0.509561
Target:  5'- uUGCAGGGACUGAgcGGCGCCccuagcagUGCCgCAGu -3'
miRNA:   3'- cACGUCUUUGGCU--CCGUGG--------ACGG-GUC- -5'
31383 5' -57.2 NC_006623.1 + 52506 0.72 0.480597
Target:  5'- -cGcCAGAGACCGGGGCAauuUUUGCCCu- -3'
miRNA:   3'- caC-GUCUUUGGCUCCGU---GGACGGGuc -5'
31383 5' -57.2 NC_006623.1 + 131141 1.08 0.001994
Target:  5'- gGUGCAGAAACCGAGGCACCUGCCCAGa -3'
miRNA:   3'- -CACGUCUUUGGCUCCGUGGACGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.