miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
31385	3'	-54.5	NC_006623.1	+	133389	1.09	0.003764
	Target:  5'- aAAAGAAGGCCCCUCCAGAAGACUCGGa -3' miRNA:   3'- -UUUCUUCCGGGGAGGUCUUCUGAGCC- -5'
31385	3'	-54.5	NC_006623.1	+	137159	0.71	0.693112
	Target:  5'- gAGGGGAGcgguGCCCCUCC-GAAGGCaCGGu -3' miRNA:   3'- -UUUCUUC----CGGGGAGGuCUUCUGaGCC- -5'
31385	3'	-54.5	NC_006623.1	+	76366	0.68	0.867718
	Target:  5'- --cGAuGGaCCCCUCCuGAGGACUUu- -3' miRNA:   3'- uuuCUuCC-GGGGAGGuCUUCUGAGcc -5'
31385	3'	-54.5	NC_006623.1	+	135020	0.68	0.875183
	Target:  5'- cGGGGAGaGCCCCUgUuGAguAGGCUUGGg -3' miRNA:   3'- uUUCUUC-CGGGGAgGuCU--UCUGAGCC- -5'
31385	3'	-54.5	NC_006623.1	+	127965	0.67	0.902744
	Target:  5'- --cGggGGCCCCgccauuuuugUUCAGGGccaGCUCGGa -3' miRNA:   3'- uuuCuuCCGGGG----------AGGUCUUc--UGAGCC- -5'
31385	3'	-54.5	NC_006623.1	+	129691	0.67	0.909039
	Target:  5'- -uGGAAGGUgCCUCCGGGAGGaaccaUCc- -3' miRNA:   3'- uuUCUUCCGgGGAGGUCUUCUg----AGcc -5'
31385	3'	-54.5	NC_006623.1	+	132790	0.67	0.91509
	Target:  5'- gAAGGggGGCCCUUUC-GAGGcCUCc- -3' miRNA:   3'- -UUUCuuCCGGGGAGGuCUUCuGAGcc -5'
31385	3'	-54.5	NC_006623.1	+	20178	0.66	0.941643
	Target:  5'- uGAGggGGCUCCUCCuuuGGAGugguUUCu- -3' miRNA:   3'- uUUCuuCCGGGGAGGu--CUUCu---GAGcc -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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