miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31385 3' -54.5 NC_006623.1 + 137159 0.71 0.693112
Target:  5'- gAGGGGAGcgguGCCCCUCC-GAAGGCaCGGu -3'
miRNA:   3'- -UUUCUUC----CGGGGAGGuCUUCUGaGCC- -5'
31385 3' -54.5 NC_006623.1 + 135020 0.68 0.875183
Target:  5'- cGGGGAGaGCCCCUgUuGAguAGGCUUGGg -3'
miRNA:   3'- uUUCUUC-CGGGGAgGuCU--UCUGAGCC- -5'
31385 3' -54.5 NC_006623.1 + 133389 1.09 0.003764
Target:  5'- aAAAGAAGGCCCCUCCAGAAGACUCGGa -3'
miRNA:   3'- -UUUCUUCCGGGGAGGUCUUCUGAGCC- -5'
31385 3' -54.5 NC_006623.1 + 132790 0.67 0.91509
Target:  5'- gAAGGggGGCCCUUUC-GAGGcCUCc- -3'
miRNA:   3'- -UUUCuuCCGGGGAGGuCUUCuGAGcc -5'
31385 3' -54.5 NC_006623.1 + 129691 0.67 0.909039
Target:  5'- -uGGAAGGUgCCUCCGGGAGGaaccaUCc- -3'
miRNA:   3'- uuUCUUCCGgGGAGGUCUUCUg----AGcc -5'
31385 3' -54.5 NC_006623.1 + 127965 0.67 0.902744
Target:  5'- --cGggGGCCCCgccauuuuugUUCAGGGccaGCUCGGa -3'
miRNA:   3'- uuuCuuCCGGGG----------AGGUCUUc--UGAGCC- -5'
31385 3' -54.5 NC_006623.1 + 76366 0.68 0.867718
Target:  5'- --cGAuGGaCCCCUCCuGAGGACUUu- -3'
miRNA:   3'- uuuCUuCC-GGGGAGGuCUUCUGAGcc -5'
31385 3' -54.5 NC_006623.1 + 20178 0.66 0.941643
Target:  5'- uGAGggGGCUCCUCCuuuGGAGugguUUCu- -3'
miRNA:   3'- uUUCuuCCGGGGAGGu--CUUCu---GAGcc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.