miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
31385	5'	-50.5	NC_006623.1	+	134983	0.66	0.994334
	Target:  5'- aGCAGAGGCcUCUgaacacuuaGGAGgAGAAUUCa- -3' miRNA:   3'- cCGUCUCCGaAGA---------CCUC-UUUUAGGac -5'
31385	5'	-50.5	NC_006623.1	+	127105	0.66	0.994334
	Target:  5'- cGCAGucGUUUUUGGGGGAcucGUUCUGg -3' miRNA:   3'- cCGUCucCGAAGACCUCUUu--UAGGAC- -5'
31385	5'	-50.5	NC_006623.1	+	62263	0.66	0.994334
	Target:  5'- uGCAGccGUgugUUCUGGGGGAaaggacGAUCCUGu -3' miRNA:   3'- cCGUCucCG---AAGACCUCUU------UUAGGAC- -5'
31385	5'	-50.5	NC_006623.1	+	1134	0.67	0.987005
	Target:  5'- cGCGGGGGCgagagggaUUGGAGGcgGUCuCUGa -3' miRNA:   3'- cCGUCUCCGaa------GACCUCUuuUAG-GAC- -5'
31385	5'	-50.5	NC_006623.1	+	67699	0.68	0.976579
	Target:  5'- uGGCuccGGGCUgcUCaGGAGAuAAUCCUa -3' miRNA:   3'- -CCGuc-UCCGA--AGaCCUCUuUUAGGAc -5'
31385	5'	-50.5	NC_006623.1	+	144257	0.68	0.967928
	Target:  5'- cGGCGGcgucuGCUUCUGGGGAccacCCUGu -3' miRNA:   3'- -CCGUCuc---CGAAGACCUCUuuuaGGAC- -5'
31385	5'	-50.5	NC_006623.1	+	117355	0.68	0.967928
	Target:  5'- cGGCGGcgucuGCUUCUGGGGAccacCCUGu -3' miRNA:   3'- -CCGUCuc---CGAAGACCUCUuuuaGGAC- -5'
31385	5'	-50.5	NC_006623.1	+	133428	1.11	0.006696
	Target:  5'- aGGCAGAGGCUUCUGGAGAAAAUCCUGc -3' miRNA:   3'- -CCGUCUCCGAAGACCUCUUUUAGGAC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home