Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31388 | 3' | -57.9 | NC_006623.1 | + | 125289 | 0.66 | 0.796259 |
Target: 5'- aGGCGCucgacGCCUUCCGCGGucgGCAAAa -3' miRNA: 3'- -CCGCGca---CGGGAGGCGUUucgCGUUU- -5' |
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31388 | 3' | -57.9 | NC_006623.1 | + | 136426 | 0.66 | 0.78714 |
Target: 5'- uGCGCGggGCaCUUCUuuuuccccacaaGCAGAGCGCAu- -3' miRNA: 3'- cCGCGCa-CG-GGAGG------------CGUUUCGCGUuu -5' |
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31388 | 3' | -57.9 | NC_006623.1 | + | 137429 | 0.67 | 0.768489 |
Target: 5'- cGGCgaGCGgaagacacGCCCUCCGCAuacGAGC-CAGc -3' miRNA: 3'- -CCG--CGCa-------CGGGAGGCGU---UUCGcGUUu -5' |
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31388 | 3' | -57.9 | NC_006623.1 | + | 6893 | 0.67 | 0.743524 |
Target: 5'- cGGgGCGUGCaauauuaaaUUCUGCAcucggggcugcaaugGAGCGCGGAg -3' miRNA: 3'- -CCgCGCACGg--------GAGGCGU---------------UUCGCGUUU- -5' |
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31388 | 3' | -57.9 | NC_006623.1 | + | 116682 | 0.68 | 0.699853 |
Target: 5'- cGUGaCGUGCUCgCUGCcGGGCGCGGAa -3' miRNA: 3'- cCGC-GCACGGGaGGCGuUUCGCGUUU- -5' |
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31388 | 3' | -57.9 | NC_006623.1 | + | 138736 | 0.68 | 0.699853 |
Target: 5'- cGGCGCGcaaggcgGCCagguaUUCGCGAcGGCGCAu- -3' miRNA: 3'- -CCGCGCa------CGGg----AGGCGUU-UCGCGUuu -5' |
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31388 | 3' | -57.9 | NC_006623.1 | + | 122875 | 0.68 | 0.699853 |
Target: 5'- cGGCGCGcaaggcgGCCagguaUUCGCGAcGGCGCAu- -3' miRNA: 3'- -CCGCGCa------CGGg----AGGCGUU-UCGCGUuu -5' |
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31388 | 3' | -57.9 | NC_006623.1 | + | 144930 | 0.68 | 0.699853 |
Target: 5'- cGUGaCGUGCUCgCUGCcGGGCGCGGAa -3' miRNA: 3'- cCGC-GCACGGGaGGCGuUUCGCGUUU- -5' |
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31388 | 3' | -57.9 | NC_006623.1 | + | 13883 | 0.7 | 0.567116 |
Target: 5'- uGCaGCGUGUugCCUCCGCAcuuAGuCGCAAAg -3' miRNA: 3'- cCG-CGCACG--GGAGGCGUu--UC-GCGUUU- -5' |
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31388 | 3' | -57.9 | NC_006623.1 | + | 145757 | 0.7 | 0.557024 |
Target: 5'- cGCGCGUacgccuacgcgGCCCUCUGCGGAcGUGCc-- -3' miRNA: 3'- cCGCGCA-----------CGGGAGGCGUUU-CGCGuuu -5' |
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31388 | 3' | -57.9 | NC_006623.1 | + | 115854 | 0.7 | 0.557024 |
Target: 5'- cGCGCGUacgccuacgcgGCCCUCUGCGGAcGUGCc-- -3' miRNA: 3'- cCGCGCA-----------CGGGAGGCGUUU-CGCGuuu -5' |
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31388 | 3' | -57.9 | NC_006623.1 | + | 117 | 0.71 | 0.517239 |
Target: 5'- uGGCGCGUuugGCCCcCUGCc-AGCGCGGc -3' miRNA: 3'- -CCGCGCA---CGGGaGGCGuuUCGCGUUu -5' |
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31388 | 3' | -57.9 | NC_006623.1 | + | 144068 | 0.71 | 0.488161 |
Target: 5'- cGGUGCcgacGUGCCUcCCGCAcguAGCGCAc- -3' miRNA: 3'- -CCGCG----CACGGGaGGCGUu--UCGCGUuu -5' |
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31388 | 3' | -57.9 | NC_006623.1 | + | 117544 | 0.71 | 0.488161 |
Target: 5'- cGGUGCcgacGUGCCUcCCGCAcguAGCGCAc- -3' miRNA: 3'- -CCGCG----CACGGGaGGCGUu--UCGCGUuu -5' |
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31388 | 3' | -57.9 | NC_006623.1 | + | 92005 | 0.75 | 0.31114 |
Target: 5'- uGCGCGUGUCCUCCGCGu-GC-CAGGu -3' miRNA: 3'- cCGCGCACGGGAGGCGUuuCGcGUUU- -5' |
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31388 | 3' | -57.9 | NC_006623.1 | + | 136858 | 1.08 | 0.001854 |
Target: 5'- gGGCGCGUGCCCUCCGCAAAGCGCAAAa -3' miRNA: 3'- -CCGCGCACGGGAGGCGUUUCGCGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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