miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31394 5' -49.9 NC_006623.1 + 121396 0.66 0.995028
Target:  5'- -gGUGc-CGGGGAGUGGacUUgGGCGa -3'
miRNA:   3'- uaCACuaGCCCUUCACUauAAgCCGC- -5'
31394 5' -49.9 NC_006623.1 + 140216 0.66 0.995028
Target:  5'- -gGUGc-CGGGGAGUGGacUUgGGCGa -3'
miRNA:   3'- uaCACuaGCCCUUCACUauAAgCCGC- -5'
31394 5' -49.9 NC_006623.1 + 85038 0.67 0.988347
Target:  5'- ---cGAUCGGugcgauGggGUGAUAUcCGGCa -3'
miRNA:   3'- uacaCUAGCC------CuuCACUAUAaGCCGc -5'
31394 5' -49.9 NC_006623.1 + 139569 0.7 0.952499
Target:  5'- -cGUGAagGGGggGgggcggcggGAUGUcCGGCGg -3'
miRNA:   3'- uaCACUagCCCuuCa--------CUAUAaGCCGC- -5'
31394 5' -49.9 NC_006623.1 + 122043 0.7 0.952499
Target:  5'- -cGUGAagGGGggGgggcggcggGAUGUcCGGCGg -3'
miRNA:   3'- uaCACUagCCCuuCa--------CUAUAaGCCGC- -5'
31394 5' -49.9 NC_006623.1 + 140607 1.09 0.011192
Target:  5'- aAUGUGAUCGGGAAGUGAUAUUCGGCGg -3'
miRNA:   3'- -UACACUAGCCCUUCACUAUAAGCCGC- -5'
31394 5' -49.9 NC_006623.1 + 121005 1.09 0.011192
Target:  5'- aAUGUGAUCGGGAAGUGAUAUUCGGCGg -3'
miRNA:   3'- -UACACUAGCCCUUCACUAUAAGCCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.