miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31399 5' -48.2 NC_006623.1 + 117816 0.66 0.998716
Target:  5'- uAGGCGCGguuacUGACUGAaccgACCCgUCUGu- -3'
miRNA:   3'- -UCUGCGU-----ACUGAUUga--UGGG-AGAUug -5'
31399 5' -48.2 NC_006623.1 + 143795 0.66 0.998716
Target:  5'- uAGGCGCGguuacUGACUGAaccgACCCgUCUGu- -3'
miRNA:   3'- -UCUGCGU-----ACUGAUUga--UGGG-AGAUug -5'
31399 5' -48.2 NC_006623.1 + 88583 0.66 0.998716
Target:  5'- uGGCGCAauuuCUAGCUACCCagCUGu- -3'
miRNA:   3'- uCUGCGUacu-GAUUGAUGGGa-GAUug -5'
31399 5' -48.2 NC_006623.1 + 32174 0.67 0.99844
Target:  5'- cAGGCGCAUGACaauuUUAUgCUCUGu- -3'
miRNA:   3'- -UCUGCGUACUGauu-GAUGgGAGAUug -5'
31399 5' -48.2 NC_006623.1 + 128083 0.67 0.998116
Target:  5'- cAGAaauuUGCGUGugUuGCaACCCUCUGGa -3'
miRNA:   3'- -UCU----GCGUACugAuUGaUGGGAGAUUg -5'
31399 5' -48.2 NC_006623.1 + 100435 0.67 0.996785
Target:  5'- cAGACGCAaacaaUG-CUGGC-GCCC-CUGGCg -3'
miRNA:   3'- -UCUGCGU-----ACuGAUUGaUGGGaGAUUG- -5'
31399 5' -48.2 NC_006623.1 + 61940 0.67 0.996785
Target:  5'- cGGCGCAUGuCUA--UGCUCUCgGACu -3'
miRNA:   3'- uCUGCGUACuGAUugAUGGGAGaUUG- -5'
31399 5' -48.2 NC_006623.1 + 1967 0.68 0.995524
Target:  5'- uGGGCGCAUGAaagGGCUACaCUgUAAUc -3'
miRNA:   3'- -UCUGCGUACUga-UUGAUGgGAgAUUG- -5'
31399 5' -48.2 NC_006623.1 + 132985 0.68 0.995304
Target:  5'- uGGCGCGggacUGACUAuauucucccccacuGCUgcGCUCUCUGGCc -3'
miRNA:   3'- uCUGCGU----ACUGAU--------------UGA--UGGGAGAUUG- -5'
31399 5' -48.2 NC_006623.1 + 31284 0.7 0.984094
Target:  5'- uAGACGUGU-AC-GGCUACCgUCUGACg -3'
miRNA:   3'- -UCUGCGUAcUGaUUGAUGGgAGAUUG- -5'
31399 5' -48.2 NC_006623.1 + 122805 0.73 0.917939
Target:  5'- cGGCGCcguUGACgggagAAUgacGCCCUCUAGCg -3'
miRNA:   3'- uCUGCGu--ACUGa----UUGa--UGGGAGAUUG- -5'
31399 5' -48.2 NC_006623.1 + 138806 0.73 0.917939
Target:  5'- cGGCGCcguUGACgggagAAUgacGCCCUCUAGCg -3'
miRNA:   3'- uCUGCGu--ACUGa----UUGa--UGGGAGAUUG- -5'
31399 5' -48.2 NC_006623.1 + 147116 1.12 0.010261
Target:  5'- uAGACGCAUGACUAACUACCCUCUAACg -3'
miRNA:   3'- -UCUGCGUACUGAUUGAUGGGAGAUUG- -5'
31399 5' -48.2 NC_006623.1 + 114496 1.12 0.010261
Target:  5'- uAGACGCAUGACUAACUACCCUCUAACg -3'
miRNA:   3'- -UCUGCGUACUGAUUGAUGGGAGAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.