miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31418 5' -49.5 NC_006635.1 + 6233 0.78 0.252844
Target:  5'- gCCGGAAAGUggaaACUUUCUGGCCGc -3'
miRNA:   3'- -GGUCUUUCAaaggUGAAAGGCCGGCc -5'
31418 5' -49.5 NC_006635.1 + 6570 0.79 0.226135
Target:  5'- gCCGGAAAGUggCaACUUUCUGGCCGc -3'
miRNA:   3'- -GGUCUUUCAaaGgUGAAAGGCCGGCc -5'
31418 5' -49.5 NC_006635.1 + 6622 1.05 0.00407
Target:  5'- gCCAGAAAGUUgCCACUUUCCGGCCGGa -3'
miRNA:   3'- -GGUCUUUCAAaGGUGAAAGGCCGGCC- -5'
31418 5' -49.5 NC_006635.1 + 6181 1.14 0.000993
Target:  5'- gCCAGAAAGUUUCCACUUUCCGGCCGGa -3'
miRNA:   3'- -GGUCUUUCAAAGGUGAAAGGCCGGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.