miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
31422	3'	-37.7	NC_006635.1	+	9470	0.74	0.996571
	Target:  5'- aGAGAGGGAAAcgucauggguacgUGUACGCCCUCUg-- -3' miRNA:   3'- -UUUUUUUUUUa------------AUAUGCGGGAGAacc -5'
31422	3'	-37.7	NC_006635.1	+	26746	0.75	0.991844
	Target:  5'- ------cAAGUUAUACGCCCUUUUa- -3' miRNA:   3'- uuuuuuuUUUAAUAUGCGGGAGAAcc -5'
31422	3'	-37.7	NC_006635.1	+	24745	0.76	0.986652
	Target:  5'- -----------aAUACGCCCUUUUGGc -3' miRNA:   3'- uuuuuuuuuuaaUAUGCGGGAGAACC- -5'
31422	3'	-37.7	NC_006635.1	+	26851	0.81	0.877562
	Target:  5'- ---------uUUAUACGCCCUUUUGGc -3' miRNA:   3'- uuuuuuuuuuAAUAUGCGGGAGAACC- -5'
31422	3'	-37.7	NC_006635.1	+	24786	0.81	0.877562
	Target:  5'- ---------uUUAUACGCCCUUUUGGc -3' miRNA:   3'- uuuuuuuuuuAAUAUGCGGGAGAACC- -5'
31422	3'	-37.7	NC_006635.1	+	26882	0.81	0.868118
	Target:  5'- ----uAAAAGUUAcACGCCCUUUUGGc -3' miRNA:   3'- uuuuuUUUUUAAUaUGCGGGAGAACC- -5'
31422	3'	-37.7	NC_006635.1	+	26639	0.95	0.2758
	Target:  5'- gAAGuuAAAAAUUAUACGCCCUUUUGGc -3' miRNA:   3'- -UUUuuUUUUUAAUAUGCGGGAGAACC- -5'
31422	3'	-37.7	NC_006635.1	+	26795	1.11	0.035218
	Target:  5'- aAAAAAAAAAAUUAUACGCCCUCUUGGc -3' miRNA:   3'- -UUUUUUUUUUAAUAUGCGGGAGAACC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home