Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31431 | 3' | -41.7 | NC_006639.1 | + | 18555 | 0.68 | 0.995823 |
Target: 5'- uCGUUGCcacAGUUUUUUCGCguuaAUACGa -3' miRNA: 3'- -GCAGCG---UCAAAAAGGUGaaaaUAUGC- -5' |
|||||||
31431 | 3' | -41.7 | NC_006639.1 | + | 4793 | 0.86 | 0.312378 |
Target: 5'- uGcCGCAaUUUUUCCACUUUUAUACGa -3' miRNA: 3'- gCaGCGUcAAAAAGGUGAAAAUAUGC- -5' |
|||||||
31431 | 3' | -41.7 | NC_006639.1 | + | 22215 | 0.88 | 0.25432 |
Target: 5'- --cCGCAGaUUUUCCGCUUUUAUACGa -3' miRNA: 3'- gcaGCGUCaAAAAGGUGAAAAUAUGC- -5' |
|||||||
31431 | 3' | -41.7 | NC_006639.1 | + | 22779 | 1.11 | 0.009606 |
Target: 5'- uCGUCGCAGUUUUUCCACUUUUAUACGu -3' miRNA: 3'- -GCAGCGUCAAAAAGGUGAAAAUAUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home