miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31442 5' -44.4 NC_006645.1 + 5269 0.66 0.966399
Target:  5'- -nGGAAUaAUUCCUgaAGUAGUAUAGg -3'
miRNA:   3'- acCCUUGgUAAGGGuaUUAUCAUAUC- -5'
31442 5' -44.4 NC_006645.1 + 5256 0.68 0.908636
Target:  5'- -nGGAAUCAUUCCUAUAcUAuUAUAGg -3'
miRNA:   3'- acCCUUGGUAAGGGUAUuAUcAUAUC- -5'
31442 5' -44.4 NC_006645.1 + 5464 0.7 0.825785
Target:  5'- aUGGGAACUAUUCCUAUAc-------- -3'
miRNA:   3'- -ACCCUUGGUAAGGGUAUuaucauauc -5'
31442 5' -44.4 NC_006645.1 + 5361 0.73 0.695786
Target:  5'- -aGGAAUaGUUUCUAUAAUAGUAUAGg -3'
miRNA:   3'- acCCUUGgUAAGGGUAUUAUCAUAUC- -5'
31442 5' -44.4 NC_006645.1 + 5373 0.75 0.593402
Target:  5'- aUGGGAACUAaUCCCAUAAUAu----- -3'
miRNA:   3'- -ACCCUUGGUaAGGGUAUUAUcauauc -5'
31442 5' -44.4 NC_006645.1 + 5441 0.79 0.360806
Target:  5'- aUGGGAAUgGUUCCCAUAAU-GUAcAGg -3'
miRNA:   3'- -ACCCUUGgUAAGGGUAUUAuCAUaUC- -5'
31442 5' -44.4 NC_006645.1 + 5153 0.84 0.181622
Target:  5'- gUGGGAACCAUUCCUAUAcUAuUAUGGg -3'
miRNA:   3'- -ACCCUUGGUAAGGGUAUuAUcAUAUC- -5'
31442 5' -44.4 NC_006645.1 + 5350 0.86 0.150016
Target:  5'- aUGGGAAUgGUUCCCAUAAUGcUAUAGg -3'
miRNA:   3'- -ACCCUUGgUAAGGGUAUUAUcAUAUC- -5'
31442 5' -44.4 NC_006645.1 + 5281 0.86 0.150016
Target:  5'- aUGGGAAUgGUUCCCAUAAUGcUAUAGg -3'
miRNA:   3'- -ACCCUUGgUAAGGGUAUUAUcAUAUC- -5'
31442 5' -44.4 NC_006645.1 + 5198 0.92 0.061339
Target:  5'- aUGGaAACCAUUCCUAUAAUAGUAUAGg -3'
miRNA:   3'- -ACCcUUGGUAAGGGUAUUAUCAUAUC- -5'
31442 5' -44.4 NC_006645.1 + 5313 0.98 0.023525
Target:  5'- aUGGGAACCAUUCCCAUAAUAuUAUGGg -3'
miRNA:   3'- -ACCCUUGGUAAGGGUAUUAUcAUAUC- -5'
31442 5' -44.4 NC_006645.1 + 5244 0.99 0.02121
Target:  5'- aUGGGAACCAUUCCCAUAAUAuUAUAGg -3'
miRNA:   3'- -ACCCUUGGUAAGGGUAUUAUcAUAUC- -5'
31442 5' -44.4 NC_006645.1 + 5405 1.12 0.002924
Target:  5'- aUGGGAACCAUUCCCAUAAUGGUAUAGg -3'
miRNA:   3'- -ACCCUUGGUAAGGGUAUUAUCAUAUC- -5'
31442 5' -44.4 NC_006645.1 + 5213 1.12 0.002633
Target:  5'- aUGGGAACCAUUCCCAUAAUAGUAUAGg -3'
miRNA:   3'- -ACCCUUGGUAAGGGUAUUAUCAUAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.