miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31443 5' -35.7 NC_006645.1 + 5327 0.68 1
Target:  5'- aUAGGAAUcAUUCCUAUAc------- -3'
miRNA:   3'- aGUCCUUAaUAAGGAUAUuauaauac -5'
31443 5' -35.7 NC_006645.1 + 5177 0.66 1
Target:  5'- -nGGGAAUgGUUCCcAUAA-AUUAUGg -3'
miRNA:   3'- agUCCUUAaUAAGGaUAUUaUAAUAC- -5'
31443 5' -35.7 NC_006645.1 + 5245 0.69 0.999999
Target:  5'- -nGGGAAccAUUCCcAUAAUAUUAUa -3'
miRNA:   3'- agUCCUUaaUAAGGaUAUUAUAAUAc -5'
31443 5' -35.7 NC_006645.1 + 5359 0.71 0.999959
Target:  5'- aUAGGAAUaGUUUCUAUAAUAg---- -3'
miRNA:   3'- aGUCCUUAaUAAGGAUAUUAUaauac -5'
31443 5' -35.7 NC_006645.1 + 5372 0.71 0.99994
Target:  5'- -uGGGAAcUAaUCCcAUAAUAUUAUGg -3'
miRNA:   3'- agUCCUUaAUaAGGaUAUUAUAAUAC- -5'
31443 5' -35.7 NC_006645.1 + 5314 0.75 0.996102
Target:  5'- -nGGGAAccAUUCCcAUAAUAUUAUGg -3'
miRNA:   3'- agUCCUUaaUAAGGaUAUUAUAAUAC- -5'
31443 5' -35.7 NC_006645.1 + 5154 0.78 0.977948
Target:  5'- -uGGGAAccAUUCCUAUAcUAUUAUGg -3'
miRNA:   3'- agUCCUUaaUAAGGAUAUuAUAAUAC- -5'
31443 5' -35.7 NC_006645.1 + 5463 0.79 0.970959
Target:  5'- -uGGGAAcUAUUCCUAUAccAUUAUGg -3'
miRNA:   3'- agUCCUUaAUAAGGAUAUuaUAAUAC- -5'
31443 5' -35.7 NC_006645.1 + 5258 0.8 0.952483
Target:  5'- aUAGGAAUcAUUCCUAUAcUAUUAUa -3'
miRNA:   3'- aGUCCUUAaUAAGGAUAUuAUAAUAc -5'
31443 5' -35.7 NC_006645.1 + 5419 0.84 0.812376
Target:  5'- aCAGGAAUaAUUCCUAUAcUAUUAUa -3'
miRNA:   3'- aGUCCUUAaUAAGGAUAUuAUAAUAc -5'
31443 5' -35.7 NC_006645.1 + 5221 0.85 0.800473
Target:  5'- aUAGGAAUgAUUCCUAUAGcAUUAUGg -3'
miRNA:   3'- aGUCCUUAaUAAGGAUAUUaUAAUAC- -5'
31443 5' -35.7 NC_006645.1 + 5290 0.85 0.800473
Target:  5'- aUAGGAAUgAUUCCUAUAGcAUUAUGg -3'
miRNA:   3'- aGUCCUUAaUAAGGAUAUUaUAAUAC- -5'
31443 5' -35.7 NC_006645.1 + 5382 0.96 0.312075
Target:  5'- aUAGGAAUUAUUCCUGUAGcAUUAUGg -3'
miRNA:   3'- aGUCCUUAAUAAGGAUAUUaUAAUAC- -5'
31443 5' -35.7 NC_006645.1 + 5305 1.15 0.026822
Target:  5'- uUCAGGAAUUAUUCCUAUAAUAUUAUGg -3'
miRNA:   3'- -AGUCCUUAAUAAGGAUAUUAUAAUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.