miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3145 3' -54 NC_001499.1 + 163 1.12 0.000025
Target:  5'- gGACGAGCCCCCAAAUGAAAGACCCCCg -3'
miRNA:   3'- -CUGCUCGGGGGUUUACUUUCUGGGGG- -5'
3145 3' -54 NC_001499.1 + 1220 0.73 0.05147
Target:  5'- aGACggGAGCCCCC-AGUGGccGACUCCa -3'
miRNA:   3'- -CUG--CUCGGGGGuUUACUuuCUGGGGg -5'
3145 3' -54 NC_001499.1 + 4597 0.68 0.125548
Target:  5'- ---uAGUCUCCAgaaaaagggggAAUGAAAGACCCCa -3'
miRNA:   3'- cugcUCGGGGGU-----------UUACUUUCUGGGGg -5'
3145 3' -54 NC_001499.1 + 3070 0.67 0.138762
Target:  5'- cGACGgcuaAGCCUCCAG-----GGACUCCCa -3'
miRNA:   3'- -CUGC----UCGGGGGUUuacuuUCUGGGGG- -5'
3145 3' -54 NC_001499.1 + 394 0.67 0.158365
Target:  5'- aACG-GCCCCCGAAgucccuUGGAcGuCUCCCa -3'
miRNA:   3'- cUGCuCGGGGGUUU------ACUUuCuGGGGG- -5'
3145 3' -54 NC_001499.1 + 4878 0.67 0.163642
Target:  5'- aGAUG-GUCCCCAGAUGcgguccaGCCCUCa -3'
miRNA:   3'- -CUGCuCGGGGGUUUACuuuc---UGGGGG- -5'
3145 3' -54 NC_001499.1 + 5702 0.67 0.163642
Target:  5'- aGAUG-GUCCCCAGAUGcgguccaGCCCUCa -3'
miRNA:   3'- -CUGCuCGGGGGUUUACuuuc---UGGGGG- -5'
3145 3' -54 NC_001499.1 + 5431 0.66 0.180435
Target:  5'- cACGA--UUCUggGUGAAAGACCCCa -3'
miRNA:   3'- cUGCUcgGGGGuuUACUUUCUGGGGg -5'
3145 3' -54 NC_001499.1 + 148 0.66 0.186363
Target:  5'- --gGGGCUcguCCgGGAUcGGGAGACCCCUg -3'
miRNA:   3'- cugCUCGG---GGgUUUA-CUUUCUGGGGG- -5'
3145 3' -54 NC_001499.1 + 5227 0.66 0.192462
Target:  5'- aGAaacuGUUaCCCA--UGAAAGACCCCCg -3'
miRNA:   3'- -CUgcu-CGG-GGGUuuACUUUCUGGGGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.