miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3145 5' -51.4 NC_001499.1 + 5193 1.07 0.000119
Target:  5'- gGUAGUCAAUCACUCAGAGGAGACCCUc -3'
miRNA:   3'- -CAUCAGUUAGUGAGUCUCCUCUGGGA- -5'
3145 5' -51.4 NC_001499.1 + 129 1.07 0.000119
Target:  5'- gGUAGUCAAUCACUCAGAGGAGACCCUc -3'
miRNA:   3'- -CAUCAGUUAGUGAGUCUCCUCUGGGA- -5'
3145 5' -51.4 NC_001499.1 + 5093 0.71 0.117371
Target:  5'- ---cUCAGUCACUCGGAGGAcuGGCgCg -3'
miRNA:   3'- caucAGUUAGUGAGUCUCCU--CUGgGa -5'
3145 5' -51.4 NC_001499.1 + 29 0.67 0.201488
Target:  5'- ---cUCAGUCACUCGGAGGAcuGGCg-- -3'
miRNA:   3'- caucAGUUAGUGAGUCUCCU--CUGgga -5'
3145 5' -51.4 NC_001499.1 + 2798 0.66 0.244685
Target:  5'- ------cAUCucCUCAGAGGAGGCCUUg -3'
miRNA:   3'- caucaguUAGu-GAGUCUCCUCUGGGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.