miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31450 3' -50.1 NC_006646.1 + 1153 0.66 0.798261
Target:  5'- gUUCAuGCCUGuUCAUAUCUGAagcaUCAa -3'
miRNA:   3'- aAAGUcCGGACuAGUAUGGACU----AGUc -5'
31450 3' -50.1 NC_006646.1 + 997 0.69 0.599172
Target:  5'- --aUAGaCCUGAaaUCcgACCUGAUCAGg -3'
miRNA:   3'- aaaGUCcGGACU--AGuaUGGACUAGUC- -5'
31450 3' -50.1 NC_006646.1 + 1316 0.69 0.599172
Target:  5'- -cUCAGaCCUGAaCAgACCUGAUCAa -3'
miRNA:   3'- aaAGUCcGGACUaGUaUGGACUAGUc -5'
31450 3' -50.1 NC_006646.1 + 967 0.7 0.551267
Target:  5'- -aUCAGGaCUGAUCAgACCUGuUCAu -3'
miRNA:   3'- aaAGUCCgGACUAGUaUGGACuAGUc -5'
31450 3' -50.1 NC_006646.1 + 1377 0.71 0.516112
Target:  5'- --aCAGGCUUGAUCAggUCUGuUCAGg -3'
miRNA:   3'- aaaGUCCGGACUAGUauGGACuAGUC- -5'
31450 3' -50.1 NC_006646.1 + 1188 0.73 0.376856
Target:  5'- -cUCAGaCCUGAUCAgAUCUGAUCAa -3'
miRNA:   3'- aaAGUCcGGACUAGUaUGGACUAGUc -5'
31450 3' -50.1 NC_006646.1 + 1018 0.78 0.187409
Target:  5'- --aCAGGUCUGAUCAguCCUGAUCAu -3'
miRNA:   3'- aaaGUCCGGACUAGUauGGACUAGUc -5'
31450 3' -50.1 NC_006646.1 + 1104 0.79 0.181925
Target:  5'- -cUCAGaCCUGAUCAgACCUGAUCAa -3'
miRNA:   3'- aaAGUCcGGACUAGUaUGGACUAGUc -5'
31450 3' -50.1 NC_006646.1 + 1165 0.8 0.147377
Target:  5'- --aCAGGCUUGAUCAggUCUGAUCAGg -3'
miRNA:   3'- aaaGUCCGGACUAGUauGGACUAGUC- -5'
31450 3' -50.1 NC_006646.1 + 1304 0.8 0.146039
Target:  5'- -aUCAGGUCUGAUCAgGCCUGAgcguauuuaaugcuUCAGa -3'
miRNA:   3'- aaAGUCCGGACUAGUaUGGACU--------------AGUC- -5'
31450 3' -50.1 NC_006646.1 + 1249 0.84 0.084336
Target:  5'- --aCAGGCUUGAUCAgAUCUGAUCAGg -3'
miRNA:   3'- aaaGUCCGGACUAGUaUGGACUAGUC- -5'
31450 3' -50.1 NC_006646.1 + 1028 0.86 0.057604
Target:  5'- -aUCAGGCCUGAaaUUAgGCCUGAUCAGa -3'
miRNA:   3'- aaAGUCCGGACU--AGUaUGGACUAGUC- -5'
31450 3' -50.1 NC_006646.1 + 1252 0.93 0.019801
Target:  5'- -cUCAGGCCUGAUCAgACCUGAUCAa -3'
miRNA:   3'- aaAGUCCGGACUAGUaUGGACUAGUc -5'
31450 3' -50.1 NC_006646.1 + 1072 1.08 0.001529
Target:  5'- aUUUCAGGCCUGAUCAUACCUGAUCAGg -3'
miRNA:   3'- -AAAGUCCGGACUAGUAUGGACUAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.