Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31450 | 5' | -46.8 | NC_006646.1 | + | 1035 | 1.1 | 0.003001 |
Target: 5'- aGUCUGAUCAGAUAUGAACAGGUCUGAu -3' miRNA: 3'- -CAGACUAGUCUAUACUUGUCCAGACU- -5' |
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31450 | 5' | -46.8 | NC_006646.1 | + | 1014 | 0.84 | 0.160772 |
Target: 5'- -cCUGAUCAGGUAUGAuCAGGcCUGAa -3' miRNA: 3'- caGACUAGUCUAUACUuGUCCaGACU- -5' |
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31450 | 5' | -46.8 | NC_006646.1 | + | 1244 | 0.82 | 0.236865 |
Target: 5'- -cUUGAUCAGAUcUGAuCAGGUCUGAg -3' miRNA: 3'- caGACUAGUCUAuACUuGUCCAGACU- -5' |
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31450 | 5' | -46.8 | NC_006646.1 | + | 1160 | 0.8 | 0.281191 |
Target: 5'- -cUUGAUCAGGUcUGAuCAGGUCUGAg -3' miRNA: 3'- caGACUAGUCUAuACUuGUCCAGACU- -5' |
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31450 | 5' | -46.8 | NC_006646.1 | + | 1105 | 0.78 | 0.359591 |
Target: 5'- --aUGAaCAGAcAUGGACAGGUCUGAu -3' miRNA: 3'- cagACUaGUCUaUACUUGUCCAGACU- -5' |
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31450 | 5' | -46.8 | NC_006646.1 | + | 1372 | 0.76 | 0.463087 |
Target: 5'- -cUUGAUCAGGUcUGuuCAGGUCUGAg -3' miRNA: 3'- caGACUAGUCUAuACuuGUCCAGACU- -5' |
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31450 | 5' | -46.8 | NC_006646.1 | + | 1215 | 0.73 | 0.629048 |
Target: 5'- aUUUGAugcuUCAGAUAUGAACAGGcaUGAa -3' miRNA: 3'- cAGACU----AGUCUAUACUUGUCCagACU- -5' |
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31450 | 5' | -46.8 | NC_006646.1 | + | 1308 | 0.71 | 0.737779 |
Target: 5'- -cUUGAUCAGGUcUGAuCAGGcCUGAg -3' miRNA: 3'- caGACUAGUCUAuACUuGUCCaGACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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