Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31451 | 3' | -49.4 | NC_006646.1 | + | 1085 | 0.68 | 0.794923 |
Target: 5'- --cUGAUCAGGcCUaauUUCAGGcCUGAu -3' miRNA: 3'- cgaACUAGUCCaGAc--AAGUCCaGACU- -5' |
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31451 | 3' | -49.4 | NC_006646.1 | + | 1053 | 0.69 | 0.716822 |
Target: 5'- --cUGAUCAGGUCggauUUCA-GUCUGAu -3' miRNA: 3'- cgaACUAGUCCAGac--AAGUcCAGACU- -5' |
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31451 | 3' | -49.4 | NC_006646.1 | + | 1015 | 0.72 | 0.562441 |
Target: 5'- --cUGAUCAGGUaUGaUCAGGcCUGAa -3' miRNA: 3'- cgaACUAGUCCAgACaAGUCCaGACU- -5' |
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31451 | 3' | -49.4 | NC_006646.1 | + | 1246 | 0.9 | 0.039313 |
Target: 5'- gGCUUGAUCAGaUCUGaUCAGGUCUGAg -3' miRNA: 3'- -CGAACUAGUCcAGACaAGUCCAGACU- -5' |
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31451 | 3' | -49.4 | NC_006646.1 | + | 1310 | 0.95 | 0.018202 |
Target: 5'- gGCUUGAUCAGGUCUGaUCAGGcCUGAg -3' miRNA: 3'- -CGAACUAGUCCAGACaAGUCCaGACU- -5' |
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31451 | 3' | -49.4 | NC_006646.1 | + | 1162 | 1.04 | 0.004674 |
Target: 5'- gGCUUGAUCAGGUCUGaUCAGGUCUGAg -3' miRNA: 3'- -CGAACUAGUCCAGACaAGUCCAGACU- -5' |
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31451 | 3' | -49.4 | NC_006646.1 | + | 1374 | 1.12 | 0.001194 |
Target: 5'- gGCUUGAUCAGGUCUGUUCAGGUCUGAg -3' miRNA: 3'- -CGAACUAGUCCAGACAAGUCCAGACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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