Results 1 - 9 of 9 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 31451 | 5' | -43 | NC_006646.1 | + | 1776 | 0.67 | 0.994217 |
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Target: 5'- cUUCc-GCAUGGugAGACGUGAAa-- -3' miRNA: 3'- aAAGucUGUACUugUCUGUACUUauc -5' |
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| 31451 | 5' | -43 | NC_006646.1 | + | 1029 | 0.7 | 0.962529 |
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Target: 5'- -aUCAGAUAUGAACAGGucUGAu--- -3' miRNA: 3'- aaAGUCUGUACUUGUCUguACUuauc -5' |
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| 31451 | 5' | -43 | NC_006646.1 | + | 1316 | 0.73 | 0.867596 |
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Target: 5'- -cUCAGACcUGAACAGACcUGAu--- -3' miRNA: 3'- aaAGUCUGuACUUGUCUGuACUuauc -5' |
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| 31451 | 5' | -43 | NC_006646.1 | + | 1387 | 0.77 | 0.674335 |
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Target: 5'- --gCAGGCAUGAACAGGCuUGAucAGg -3' miRNA: 3'- aaaGUCUGUACUUGUCUGuACUuaUC- -5' |
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| 31451 | 5' | -43 | NC_006646.1 | + | 1207 | 0.88 | 0.197597 |
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Target: 5'- cUUCAGAUAUGAACAGGCAUGAn--- -3' miRNA: 3'- aAAGUCUGUACUUGUCUGUACUuauc -5' |
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| 31451 | 5' | -43 | NC_006646.1 | + | 1185 | 0.93 | 0.094459 |
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Target: 5'- --aCAGACAUGAGCAGACAUGAAcAGg -3' miRNA: 3'- aaaGUCUGUACUUGUCUGUACUUaUC- -5' |
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| 31451 | 5' | -43 | NC_006646.1 | + | 1271 | 0.97 | 0.057299 |
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Target: 5'- cUUCAGACAUGAACAGGCAUGGAcAGg -3' miRNA: 3'- aAAGUCUGUACUUGUCUGUACUUaUC- -5' |
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| 31451 | 5' | -43 | NC_006646.1 | + | 1123 | 0.98 | 0.050073 |
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Target: 5'- gUUCAGACAUGAACAGGCAUGAAcAGa -3' miRNA: 3'- aAAGUCUGUACUUGUCUGUACUUaUC- -5' |
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| 31451 | 5' | -43 | NC_006646.1 | + | 1336 | 1.09 | 0.009044 |
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Target: 5'- gUUUCAGACAUGAACAGACAUGAAUAGg -3' miRNA: 3'- -AAAGUCUGUACUUGUCUGUACUUAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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