miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31453 5' -52.8 NC_006646.1 + 1319 0.66 0.659833
Target:  5'- aGACCUGAaCAGaccUGAUCAaGCCUg -3'
miRNA:   3'- gCUGGACUaGUCcauACUAGUcCGGA- -5'
31453 5' -52.8 NC_006646.1 + 1034 0.67 0.624764
Target:  5'- --gUCUGAUCAGaUAUGAaCAGGUCUg -3'
miRNA:   3'- gcuGGACUAGUCcAUACUaGUCCGGA- -5'
31453 5' -52.8 NC_006646.1 + 1067 0.74 0.275342
Target:  5'- aGGCCUGAUCAuaccUGAUCAGGUCg -3'
miRNA:   3'- gCUGGACUAGUccauACUAGUCCGGa -5'
31453 5' -52.8 NC_006646.1 + 1255 0.74 0.260817
Target:  5'- aGGCCUGAUCAGaccUGAUCAaGCCUa -3'
miRNA:   3'- gCUGGACUAGUCcauACUAGUcCGGA- -5'
31453 5' -52.8 NC_006646.1 + 1191 0.75 0.220977
Target:  5'- aGACCUGAUCAGaucUGAUCAaGCCUg -3'
miRNA:   3'- gCUGGACUAGUCcauACUAGUcCGGA- -5'
31453 5' -52.8 NC_006646.1 + 1107 0.75 0.220977
Target:  5'- aGACCUGAUCAGaccUGAUCAaGCCUg -3'
miRNA:   3'- gCUGGACUAGUCcauACUAGUcCGGA- -5'
31453 5' -52.8 NC_006646.1 + 1247 0.76 0.191847
Target:  5'- aGGCUUGAUCAGaucUGAUCAGGUCUg -3'
miRNA:   3'- gCUGGACUAGUCcauACUAGUCCGGA- -5'
31453 5' -52.8 NC_006646.1 + 1099 0.77 0.166141
Target:  5'- aGACaUGGaCAGGUcUGAUCAGGCCUa -3'
miRNA:   3'- gCUGgACUaGUCCAuACUAGUCCGGA- -5'
31453 5' -52.8 NC_006646.1 + 1375 0.8 0.109887
Target:  5'- aGGCUUGAUCAGGUcUGuUCAGGUCUg -3'
miRNA:   3'- gCUGGACUAGUCCAuACuAGUCCGGA- -5'
31453 5' -52.8 NC_006646.1 + 1163 0.88 0.026597
Target:  5'- aGGCUUGAUCAGGUcUGAUCAGGUCUg -3'
miRNA:   3'- gCUGGACUAGUCCAuACUAGUCCGGA- -5'
31453 5' -52.8 NC_006646.1 + 1311 0.93 0.011358
Target:  5'- aGGCUUGAUCAGGUcUGAUCAGGCCUg -3'
miRNA:   3'- gCUGGACUAGUCCAuACUAGUCCGGA- -5'
31453 5' -52.8 NC_006646.1 + 1010 1.09 0.000842
Target:  5'- cCGACCUGAUCAGGUAUGAUCAGGCCUg -3'
miRNA:   3'- -GCUGGACUAGUCCAUACUAGUCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.