miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31457 3' -39.4 NC_006649.1 + 5416 0.73 0.985938
Target:  5'- uAUAGGAAUaAUUCCUAUAcUAUUAUa -3'
miRNA:   3'- -UAUCCUUAaUAAGGAUAUcGUAAUAc -5'
31457 3' -39.4 NC_006649.1 + 31286 0.73 0.985938
Target:  5'- uAUAGGAAUaAUUCCUAUAcUAUUAUa -3'
miRNA:   3'- -UAUCCUUAaUAAGGAUAUcGUAAUAc -5'
31457 3' -39.4 NC_006649.1 + 5602 0.73 0.98112
Target:  5'- uAUGGGAAcaGUUCCca-GGCAUUAUGg -3'
miRNA:   3'- -UAUCCUUaaUAAGGauaUCGUAAUAC- -5'
31457 3' -39.4 NC_006649.1 + 31541 0.8 0.802494
Target:  5'- cGUGGGAAcUAUUCCUAUAcUAUUAUGg -3'
miRNA:   3'- -UAUCCUUaAUAAGGAUAUcGUAAUAC- -5'
31457 3' -39.4 NC_006649.1 + 5508 0.83 0.651991
Target:  5'- uAUAGGAAUUAUUCCUAUAaUAUUAUa -3'
miRNA:   3'- -UAUCCUUAAUAAGGAUAUcGUAAUAc -5'
31457 3' -39.4 NC_006649.1 + 5370 0.83 0.63883
Target:  5'- uAUGGGAAcUAUUCCUAUAcCAUUAUGg -3'
miRNA:   3'- -UAUCCUUaAUAAGGAUAUcGUAAUAC- -5'
31457 3' -39.4 NC_006649.1 + 31240 0.83 0.63883
Target:  5'- uAUGGGAAcUAUUCCUAUAcCAUUAUGg -3'
miRNA:   3'- -UAUCCUUaAUAAGGAUAUcGUAAUAC- -5'
31457 3' -39.4 NC_006649.1 + 31378 0.89 0.36046
Target:  5'- uAUAGGAAUUAUUCCUAUAaUAUUAUGg -3'
miRNA:   3'- -UAUCCUUAAUAAGGAUAUcGUAAUAC- -5'
31457 3' -39.4 NC_006649.1 + 31473 0.93 0.215899
Target:  5'- uAUAGGAAUgAUUCUUAUAGCAUUAUGg -3'
miRNA:   3'- -UAUCCUUAaUAAGGAUAUCGUAAUAC- -5'
31457 3' -39.4 NC_006649.1 + 5557 0.94 0.196236
Target:  5'- uAUAGGAAUaAUUCCUAUAGCAUUAUa -3'
miRNA:   3'- -UAUCCUUAaUAAGGAUAUCGUAAUAc -5'
31457 3' -39.4 NC_006649.1 + 31427 1 0.088361
Target:  5'- uAUAGGAAUaAUUCCUAUAGCAUUAUGg -3'
miRNA:   3'- -UAUCCUUAaUAAGGAUAUCGUAAUAC- -5'
31457 3' -39.4 NC_006649.1 + 5465 1.1 0.022639
Target:  5'- uAUAGGAAUUAUUCCUAUAGCAUUAUGg -3'
miRNA:   3'- -UAUCCUUAAUAAGGAUAUCGUAAUAC- -5'
31457 3' -39.4 NC_006649.1 + 31335 1.1 0.022639
Target:  5'- uAUAGGAAUUAUUCCUAUAGCAUUAUGg -3'
miRNA:   3'- -UAUCCUUAAUAAGGAUAUCGUAAUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.