miRNA: 3'- -GGGUAUUaccAUAUCCUUAUCAAGGG- -5'
miRNA: 3'- -GGGUAUUAcCAUAUCCUUAUCAAGGG- -5'
miRNA: 3'- -GGGUAUUACCAUAUCCUUAUCAAGGG- -5'
miRNA: 3'- -GGGUAUUACCAUAUCCUUAUCAAGGG- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31457 | 5' | -43.4 | NC_006649.1 | + | 5565 | 0.9 | 0.180734 |
|
Target: 5'- uCCCAUAAaauUAUGGGAAUAGUUCCCa -3' miRNA: 3'- -GGGUAUUaccAUAUCCUUAUCAAGGG- -5' |
|||||||
| 31457 | 5' | -43.4 | NC_006649.1 | + | 31481 | 1.03 | 0.027085 |
|
Target: 5'- uCCCAUAAUaGUAUAGGAAUAGUUCCCa -3' miRNA: 3'- -GGGUAUUAcCAUAUCCUUAUCAAGGG- -5' |
|||||||
| 31457 | 5' | -43.4 | NC_006649.1 | + | 5430 | 1.18 | 0.003087 |
|
Target: 5'- uCCCAUAAUGGUAUAGGAAUAGUUCCCa -3' miRNA: 3'- -GGGUAUUACCAUAUCCUUAUCAAGGG- -5' |
|||||||
| 31457 | 5' | -43.4 | NC_006649.1 | + | 31300 | 1.18 | 0.003087 |
|
Target: 5'- uCCCAUAAUGGUAUAGGAAUAGUUCCCa -3' miRNA: 3'- -GGGUAUUACCAUAUCCUUAUCAAGGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home