Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31458 | 3' | -42.4 | NC_006649.1 | + | 31390 | 0.97 | 0.07919 |
Target: 5'- uCCUAUAAUaUUAUGGGAAUGGUUCCCa -3' miRNA: 3'- -GGGUAUUAaAAUACCCUUGUCAAGGG- -5' |
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31458 | 3' | -42.4 | NC_006649.1 | + | 31638 | 0.98 | 0.069517 |
Target: 5'- uCCCAUAAaaUUAUGGGAACAGUUUCCa -3' miRNA: 3'- -GGGUAUUaaAAUACCCUUGUCAAGGG- -5' |
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31458 | 3' | -42.4 | NC_006649.1 | + | 31572 | 1 | 0.053471 |
Target: 5'- uCCUAUAAU--UAUGGGAACAGUUCCCa -3' miRNA: 3'- -GGGUAUUAaaAUACCCUUGUCAAGGG- -5' |
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31458 | 3' | -42.4 | NC_006649.1 | + | 5565 | 1.01 | 0.050059 |
Target: 5'- uCCCAUAAaaUUAUGGGAAUAGUUCCCa -3' miRNA: 3'- -GGGUAUUaaAAUACCCUUGUCAAGGG- -5' |
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31458 | 3' | -42.4 | NC_006649.1 | + | 5613 | 1.19 | 0.00391 |
Target: 5'- uCCCAUAAUUUUAUGGGAACAGUUCCCa -3' miRNA: 3'- -GGGUAUUAAAAUACCCUUGUCAAGGG- -5' |
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31458 | 3' | -42.4 | NC_006649.1 | + | 31686 | 1.19 | 0.00391 |
Target: 5'- uCCCAUAAUUUUAUGGGAACAGUUCCCa -3' miRNA: 3'- -GGGUAUUAAAAUACCCUUGUCAAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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