miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31458 5' -40 NC_006649.1 + 31286 0.65 0.99999
Target:  5'- uAUAGGAAUaAUUCCUAUAcuAUUAUa- -3'
miRNA:   3'- -UAUCCUUGaUAAGGGUAUu-UAAUAcc -5'
31458 5' -40 NC_006649.1 + 5396 0.66 0.999985
Target:  5'- --nGGAAUgGUUCCCAUAAugcUAUaGGa -3'
miRNA:   3'- uauCCUUGaUAAGGGUAUUua-AUA-CC- -5'
31458 5' -40 NC_006649.1 + 5577 0.68 0.99983
Target:  5'- --nGGAACcAUUCCUAUAAuAUUAUaGGa -3'
miRNA:   3'- uauCCUUGaUAAGGGUAUU-UAAUA-CC- -5'
31458 5' -40 NC_006649.1 + 27284 0.68 0.999596
Target:  5'- uUAGGAACUGUUCCUucg----AUGa -3'
miRNA:   3'- uAUCCUUGAUAAGGGuauuuaaUACc -5'
31458 5' -40 NC_006649.1 + 31289 0.71 0.995916
Target:  5'- uAUAGGAAUaGUUCCCAUAAu------ -3'
miRNA:   3'- -UAUCCUUGaUAAGGGUAUUuaauacc -5'
31458 5' -40 NC_006649.1 + 31472 0.71 0.99407
Target:  5'- --nGGAACcAUUCCCAUAAuagUAUaGGa -3'
miRNA:   3'- uauCCUUGaUAAGGGUAUUua-AUA-CC- -5'
31458 5' -40 NC_006649.1 + 5439 0.71 0.99407
Target:  5'- --nGGAACcAUUCCCAUAAuggUAUaGGa -3'
miRNA:   3'- uauCCUUGaUAAGGGUAUUua-AUA-CC- -5'
31458 5' -40 NC_006649.1 + 31588 0.76 0.921189
Target:  5'- uAUGGGAACaGUUCCUAUAcAAUUAUaGGa -3'
miRNA:   3'- -UAUCCUUGaUAAGGGUAU-UUAAUA-CC- -5'
31458 5' -40 NC_006649.1 + 31541 0.77 0.906371
Target:  5'- cGUGGGAACUAUUCCUAUAc------- -3'
miRNA:   3'- -UAUCCUUGAUAAGGGUAUuuaauacc -5'
31458 5' -40 NC_006649.1 + 5599 0.77 0.890058
Target:  5'- --nGGAACaGUUCCCAggcAUUAUGGg -3'
miRNA:   3'- uauCCUUGaUAAGGGUauuUAAUACC- -5'
31458 5' -40 NC_006649.1 + 5534 0.81 0.71603
Target:  5'- uAUAGGuACcAUUCCCAUAAuAUUAUGGg -3'
miRNA:   3'- -UAUCCuUGaUAAGGGUAUU-UAAUACC- -5'
31458 5' -40 NC_006649.1 + 31450 0.81 0.71603
Target:  5'- uAUGGGAACcAUUCCCAUAAuAUUAUaGGa -3'
miRNA:   3'- -UAUCCUUGaUAAGGGUAUU-UAAUA-CC- -5'
31458 5' -40 NC_006649.1 + 5508 0.82 0.690722
Target:  5'- uAUAGGAAUUAUUCCUAUAAuAUUAUaGGa -3'
miRNA:   3'- -UAUCCUUGAUAAGGGUAUU-UAAUA-CC- -5'
31458 5' -40 NC_006649.1 + 31627 0.82 0.665105
Target:  5'- --nGGAACUGUUCCCAU-AAUUAUaGGa -3'
miRNA:   3'- uauCCUUGAUAAGGGUAuUUAAUA-CC- -5'
31458 5' -40 NC_006649.1 + 31447 0.83 0.639317
Target:  5'- uAUAGGAAUgGUUUCCAUAAuUUAUGGg -3'
miRNA:   3'- -UAUCCUUGaUAAGGGUAUUuAAUACC- -5'
31458 5' -40 NC_006649.1 + 31698 0.83 0.613492
Target:  5'- uAUGGaAACUGUUCCCAUAAuuUUAUGGg -3'
miRNA:   3'- -UAUCcUUGAUAAGGGUAUUu-AAUACC- -5'
31458 5' -40 NC_006649.1 + 31404 0.84 0.600605
Target:  5'- uAUGGGAACcAUUUCCAUAAuAUUAUGGa -3'
miRNA:   3'- -UAUCCUUGaUAAGGGUAUU-UAAUACC- -5'
31458 5' -40 NC_006649.1 + 31332 0.86 0.49995
Target:  5'- uAUGGGAACUAaUUCCAUAAuAUUAUGGa -3'
miRNA:   3'- -UAUCCUUGAUaAGGGUAUU-UAAUACC- -5'
31458 5' -40 NC_006649.1 + 31539 0.88 0.407456
Target:  5'- uAUAGGAACUGUUCCCAUAAuucuaGGa -3'
miRNA:   3'- -UAUCCUUGAUAAGGGUAUUuaauaCC- -5'
31458 5' -40 NC_006649.1 + 31335 0.92 0.257997
Target:  5'- uAUAGGAAUUAUUCCUAUAGcAUUAUGGa -3'
miRNA:   3'- -UAUCCUUGAUAAGGGUAUU-UAAUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.